View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0459_high_3 (Length: 248)
Name: NF0459_high_3
Description: NF0459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0459_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 10564977 - 10565063
Alignment:
| Q |
152 |
tttgagcagatttttatcattaagaatgtgtatcatcaagaataagctcttctcttttttaaagcatacattcaaatcgactttgggt |
239 |
Q |
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| T |
10564977 |
tttgagcagatttttatcattaagaatgtgtatcatcaagaataagctcttctcttttttaaagcatacattc-aattgactttgggt |
10565063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 10564785 - 10564862
Alignment:
| Q |
29 |
aaattatgacaaa--tattttgaccggcaatgcctggtgtcagcttctgacagtactgccacatgaaatagcggtatt |
104 |
Q |
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| T |
10564785 |
aaattatgacaaaaatattttgaccggcaatgcctcgtgtcagcttctgacagtaccgccacatgaaatagcggtatt |
10564862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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