View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0460_low_2 (Length: 279)
Name: NF0460_low_2
Description: NF0460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0460_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 38729450 - 38729259
Alignment:
| Q |
31 |
gagcagagagccatgaccagttggttcccaagtctctcaaattttctgacctaaacctaatattgcagccacctcctaccttaaaaacttactccttaaa |
130 |
Q |
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| T |
38729450 |
gagcagacagccatgaccagttggttcccaagtctctcaaattttctgacctaaacctaatattgtagccacctcctaccttaaaaacttactccttaaa |
38729351 |
T |
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| Q |
131 |
caattaaaatcaattgtaacataaattcttttcagatagttaccatgttacattataaaatcacatttgtatttccttagacttgaccaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38729350 |
caattaaaatcaattgtaacataaattcttttcagatagttaccatgttacattataaaaatacatttgtatttccttagacttgaccaatt |
38729259 |
T |
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