View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0462_high_2 (Length: 449)
Name: NF0462_high_2
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0462_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 29 - 437
Target Start/End: Original strand, 41638404 - 41638812
Alignment:
| Q |
29 |
aattactacatcagatttgtattgatcagcttgattcagaataggagaaacaatgaattctatgtggtcctctccaactccagattgctctaaaaatctg |
128 |
Q |
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| T |
41638404 |
aattactacatcagatttgtattgatcagcttgattcagaataggagaaacaatgaattctatgtggtcctctccaactccagattgctctaaaaatctg |
41638503 |
T |
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| Q |
129 |
acgcgcgttgctattgtttgatatcgctacggccttgtaagctgatgccaatgtgaattcaccatcacttgcaagcctccatgaaacacagtcatcacta |
228 |
Q |
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| T |
41638504 |
acgcgcgttgctattgtttgatatcgctacggccttgtaagctgatgccaatgtgaattcaccatcacttgcaagcctccatgaaacacagtcatcacta |
41638603 |
T |
|
| Q |
229 |
ctttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagggaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtca |
328 |
Q |
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| T |
41638604 |
ctttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagggaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtca |
41638703 |
T |
|
| Q |
329 |
acataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtatagtcaataacgagcatatcagtgtcagcccagttatctatccttc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41638704 |
acataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtatagtcaataacgggcatatcagtgtcagcccagttatctatccttc |
41638803 |
T |
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| Q |
429 |
cagaattca |
437 |
Q |
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| T |
41638804 |
cagaattca |
41638812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 76 - 420
Target Start/End: Complemental strand, 2719403 - 2719080
Alignment:
| Q |
76 |
aaacaatgaattctatgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatg |
175 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| || || | | || | ||||||| |
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| T |
2719403 |
aaacattgaattctatgtggtcctctccaactccaaattgctctaaaaatctgatgcgcgttgctattgttcgatctcactgcagtctcattagctgata |
2719304 |
T |
|
| Q |
176 |
ccaatgtgaattcaccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatt |
275 |
Q |
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||| |||||| ||||||||||| ||||||||| | || ||||||||||| ||||||||||| ||| |||| |||||||||||||||| |
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| T |
2719303 |
ccagcgtgaatcaaccatcacttgtaagcctccaagcaagacagtcatcaccactttgaggatgaggtggaggcaacctcttgatgtca----------- |
2719215 |
T |
|
| Q |
276 |
tgagggaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgact |
375 |
Q |
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||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| | || |||| |
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| T |
2719214 |
---------tgtatttatcaaactactctggtcccatctttct-tcactgtcaacataattttcaaccacttttgttgcttcaaaatgctcagtcagact |
2719125 |
T |
|
| Q |
376 |
aaccgtatagtcaataacga-gcatatcagtgtcagcccagttatc |
420 |
Q |
| |
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||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
2719124 |
aaccgtatagtttat-acgaggcatatcagtgtcagcccagttatc |
2719080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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