View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0462_high_3 (Length: 410)
Name: NF0462_high_3
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0462_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 95 - 398
Target Start/End: Complemental strand, 18340565 - 18340260
Alignment:
| Q |
95 |
aattcaccttccctttctcccccgacgccgacgacctcgctctcttccaccgtgnnnnnnnnnnnnnnnnnnnnnnnttatccaccctcacaaaccctaa |
194 |
Q |
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| T |
18340565 |
aattcaccttccctttctcccccgacgccgacgacctcgctctcttccaccgtgccacaacccacaccaccacccacttatccaccctcacaaaccctaa |
18340466 |
T |
|
| Q |
195 |
a-cctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatggg-aaaaattcttcgccggaaacaaccatctcttcaatatat |
292 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
18340465 |
aacctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatggggaaaaattcttcaccggaaacaaccatctcttcaatatat |
18340366 |
T |
|
| Q |
293 |
acatccatgcagaccccaccacctccgtcgtctccccgggcggtgtcttccataaccgtttcatctcttccaaaccaacccaacgtgcttccccatcact |
392 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
18340365 |
acatccatgcagaccccaccacctccgtcgtctcccctggcggtgtcttccataaccgtttcatctcttccaaaccaacccaacgtgcctcaccatcact |
18340266 |
T |
|
| Q |
393 |
catctc |
398 |
Q |
| |
|
|||||| |
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| T |
18340265 |
catctc |
18340260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 177 - 402
Target Start/End: Complemental strand, 18345639 - 18345414
Alignment:
| Q |
177 |
caccctcacaaaccctaaacctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatgggaaaaattcttcgccggaaacaac |
276 |
Q |
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|||||||| ||| || ||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
18345639 |
caccctcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaaacaac |
18345540 |
T |
|
| Q |
277 |
catctcttcaatatatacatccatgcagaccccaccacctccgtcgtctccccgggcggtgtcttccataaccgtttcatctcttccaaaccaacccaac |
376 |
Q |
| |
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|| |||||||| || ||| |||||||||| |||||||||| |||| |||||| |||||||||||||| |||||||||||| |||||||||| ||| ||| |
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| T |
18345539 |
cacctcttcaacatctacgtccatgcagatcccaccacctatgtcgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccaccaaac |
18345440 |
T |
|
| Q |
377 |
gtgcttccccatcactcatctctgct |
402 |
Q |
| |
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|| || |||||||||||| ||||| |
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| T |
18345439 |
gttactctccatcactcatcgctgct |
18345414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 18303222 - 18303352
Alignment:
| Q |
178 |
accctcacaaaccctaaacctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatgggaaaaattcttcgccggaaacaacc |
277 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||| | |||||||||| |
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|
| T |
18303222 |
accctcaagaaccctaaacccaaaatcgccttcctcttcctcacaaacaccaacttcacctttgctcctttgtgggaaatattctttactggaaacaacc |
18303321 |
T |
|
| Q |
278 |
atctcttcaatatatacatccatgcagaccc |
308 |
Q |
| |
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| |||||||| || |||||||| |||||||| |
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| T |
18303322 |
acctcttcaacatctacatccacgcagaccc |
18303352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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