View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0462_high_4 (Length: 370)
Name: NF0462_high_4
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0462_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 64 - 341
Target Start/End: Original strand, 31092793 - 31093070
Alignment:
| Q |
64 |
ttcctattagtgtattacatacttgaactagtaaactgttaactcatccccaatcaagacttccaaactaaaatcttaatcttcggcaaattacggttaa |
163 |
Q |
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| T |
31092793 |
ttcctattagtgtattacatacttgaactagtaaactgttaactcatccccaatcaagacttccaaactaaaatcttaatcttcggcaaattacggttaa |
31092892 |
T |
|
| Q |
164 |
ctttcaaattgttgagttcaacgaatttctatgttatataaaaccggttccctttcgaattgttggtatggtaaggttagtattttcaagtgaatcataa |
263 |
Q |
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| T |
31092893 |
ctttcaaattgttgagttcaacgaattgctatgttatgtaaaaccggttccctttcaaattgttggtatggtaaggttagtattttcaagtgaatcataa |
31092992 |
T |
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| Q |
264 |
ttgttgcacccatcagatataagcaagtttttattaaatgagaagaaatagtcttattgggagtttataagtatataa |
341 |
Q |
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| T |
31092993 |
ttgttgcacccatcagatataagcaagtttttattaaatgagaagaaatagtcttattgggagtttataagtatataa |
31093070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 31048369 - 31048292
Alignment:
| Q |
234 |
gtaaggttagtattttcaagtgaatcataattgttgcacccatcagatataagc----aagtttttattaaatgagaa |
307 |
Q |
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||||||||||| |||||| ||||||||||||||||||| ||||| ||||| | | |||||||||||||||||||| |
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| T |
31048369 |
gtaaggttagttttttcatgtgaatcataattgttgcagccatcggatattaacattaaagtttttattaaatgagaa |
31048292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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