View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0462_high_5 (Length: 314)
Name: NF0462_high_5
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0462_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 67 - 272
Target Start/End: Complemental strand, 43076618 - 43076413
Alignment:
| Q |
67 |
gaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggtattagcgtcggtgat |
166 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43076618 |
gaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggtattagcgtcggtgat |
43076519 |
T |
|
| Q |
167 |
agcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076518 |
agcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttc |
43076419 |
T |
|
| Q |
267 |
tctgct |
272 |
Q |
| |
|
|||||| |
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|
| T |
43076418 |
tctgct |
43076413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 67 - 272
Target Start/End: Complemental strand, 43086845 - 43086640
Alignment:
| Q |
67 |
gaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggtattagcgtcggtgat |
166 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43086845 |
gaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggtattagcgtcggtgat |
43086746 |
T |
|
| Q |
167 |
agcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttc |
266 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43086745 |
agcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttc |
43086646 |
T |
|
| Q |
267 |
tctgct |
272 |
Q |
| |
|
|||||| |
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|
| T |
43086645 |
tctgct |
43086640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 67 - 272
Target Start/End: Complemental strand, 43090516 - 43090311
Alignment:
| Q |
67 |
gaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggtattagcgtcggtgat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43090516 |
gaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggtattagcgtcggtgat |
43090417 |
T |
|
| Q |
167 |
agcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090416 |
agcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttc |
43090317 |
T |
|
| Q |
267 |
tctgct |
272 |
Q |
| |
|
|||||| |
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|
| T |
43090316 |
tctgct |
43090311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 25247401 - 25247347
Alignment:
| Q |
68 |
aaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgctt |
122 |
Q |
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|
||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||| |
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|
| T |
25247401 |
aaggttggtgcttttatttctggtcgttatcatatacatgttcgttgccctgctt |
25247347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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