View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0462_low_14 (Length: 306)
Name: NF0462_low_14
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0462_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 34131027 - 34131150
Alignment:
| Q |
97 |
aagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34131027 |
aagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcct |
34131126 |
T |
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| Q |
197 |
ccaacctcatcttgggcaagaata |
220 |
Q |
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|||||||||||||||||||||||| |
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| T |
34131127 |
ccaacctcatcttgggcaagaata |
34131150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 34142524 - 34142645
Alignment:
| Q |
99 |
gtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcctcc |
198 |
Q |
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|||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |||| ||| |||||||||||||||||||| |
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| T |
34142524 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaagaacccactgttgatctgttttccgcttcacttcaagtcctcc |
34142623 |
T |
|
| Q |
199 |
aacctcatcttgggcaagaata |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
34142624 |
aacctcatcttgggcaagaata |
34142645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 34136718 - 34136841
Alignment:
| Q |
97 |
aagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcct |
196 |
Q |
| |
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||||||||| || ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | ||| || ||| ||||||||||||| || |
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| T |
34136718 |
aagtacctggataatatcacaaacgttgataatgtaagcatctgaggtaggtttcacaagaacccactcttgtgatgctttgtgcttcacttcaagaccc |
34136817 |
T |
|
| Q |
197 |
ccaacctcatcttgggcaagaata |
220 |
Q |
| |
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||||| |||||||||||||||||| |
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|
| T |
34136818 |
ccaacatcatcttgggcaagaata |
34136841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 34139876 - 34139999
Alignment:
| Q |
97 |
aagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcct |
196 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||| || | |||| |||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
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| T |
34139876 |
aagtacctgaataataccgccaatgttgataatatacggatctcgggtaggttttacaagaacccgttgttgatctgttttacgcttcacttcaagacct |
34139975 |
T |
|
| Q |
197 |
ccaacctcatcttgggcaagaata |
220 |
Q |
| |
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||||||||| | ||| ||||||| |
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| T |
34139976 |
tcaacctcatttagggtaagaata |
34139999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 34125885 - 34126008
Alignment:
| Q |
97 |
aagtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgattt-acgcttcacttcaagtcc |
195 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||| ||| |||||| |||||| ||||||||||||||||||| || || |||| | ||||||||||||| || |
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|
| T |
34125885 |
aagtacctgagtgagatcaccaacgttgatgatgaaagcatttggggtgggtttcacaagaacccattctt-gtgaaatttgatgcttcacttcaagacc |
34125983 |
T |
|
| Q |
196 |
tccaacctcatcttgggcaagaata |
220 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
34125984 |
agcaacctcatcttgggcaagaata |
34126008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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