View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0462_low_19 (Length: 228)

Name: NF0462_low_19
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0462_low_19
NF0462_low_19
[»] chr5 (2 HSPs)
chr5 (1-104)||(10219245-10219350)
chr5 (3-87)||(13853943-13854027)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10219350 - 10219245
Alignment:
Q  1 ctgattctaaacgttctatgcttctgttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattct--cagatactat 98  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  10219350 ctgattctaaacgttctatgcttcttttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattctcacagatactat 10219251  T
Q  99 gttatt 104  Q
    ||||||    
T  10219250 gttatt 10219245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 13853943 - 13854027
Alignment:
Q  3 gattctaaacgttctatgcttctgttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattc 87  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13853943 gattctaaacgttctatggttctgttgcttcctaaacttaattctcgtacttctctccatagttcttctatcttctcattcattc 13854027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University