View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0462_low_2 (Length: 537)

Name: NF0462_low_2
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0462_low_2
NF0462_low_2
[»] chr1 (25 HSPs)
chr1 (289-467)||(50444565-50444743)
chr1 (18-161)||(50444279-50444422)
chr1 (326-421)||(46110399-46110494)
chr1 (334-470)||(27814360-27814497)
chr1 (326-467)||(15072693-15072835)
chr1 (329-467)||(16963905-16964043)
chr1 (291-401)||(35943315-35943426)
chr1 (297-421)||(48527652-48527775)
chr1 (343-467)||(49802816-49802940)
chr1 (327-401)||(41873875-41873950)
chr1 (404-470)||(52628855-52628921)
chr1 (318-390)||(50442752-50442825)
chr1 (316-422)||(18821632-18821738)
chr1 (375-470)||(45584960-45585057)
chr1 (326-405)||(14470989-14471069)
chr1 (326-384)||(12665944-12666003)
chr1 (326-447)||(30535573-30535694)
chr1 (326-369)||(38280999-38281042)
chr1 (291-459)||(44999329-44999499)
chr1 (291-401)||(46467283-46467393)
chr1 (326-375)||(21507229-21507277)
chr1 (342-415)||(48492853-48492925)
chr1 (291-394)||(15232897-15233000)
chr1 (317-373)||(32693302-32693358)
chr1 (326-401)||(52078047-52078123)
[»] chr3 (25 HSPs)
chr3 (20-161)||(18197534-18197675)
chr3 (289-470)||(18197215-18197389)
chr3 (329-466)||(34818158-34818295)
chr3 (325-467)||(10730956-10731098)
chr3 (329-467)||(41263709-41263847)
chr3 (329-401)||(40244322-40244395)
chr3 (329-398)||(3209873-3209943)
chr3 (339-467)||(27837991-27838118)
chr3 (301-401)||(42685013-42685114)
chr3 (329-467)||(35372066-35372203)
chr3 (329-452)||(38240992-38241114)
chr3 (375-467)||(3208555-3208648)
chr3 (316-394)||(7270467-7270546)
chr3 (291-421)||(21074148-21074279)
chr3 (375-470)||(38242468-38242564)
chr3 (316-376)||(40892319-40892379)
chr3 (408-467)||(50810819-50810879)
chr3 (408-467)||(50864985-50865045)
chr3 (375-452)||(53622748-53622827)
chr3 (340-422)||(40745384-40745466)
chr3 (351-461)||(53612948-53613058)
chr3 (329-462)||(26887462-26887595)
chr3 (326-467)||(53624266-53624406)
chr3 (315-398)||(35371048-35371132)
chr3 (321-467)||(53194769-53194915)
[»] chr5 (13 HSPs)
chr5 (326-470)||(325089-325233)
chr5 (348-467)||(30912088-30912207)
chr5 (291-467)||(22308667-22308844)
chr5 (297-421)||(1102736-1102859)
chr5 (310-467)||(27705202-27705361)
chr5 (326-467)||(324109-324252)
chr5 (375-467)||(22047803-22047897)
chr5 (291-421)||(30910858-30910990)
chr5 (351-467)||(30857871-30857987)
chr5 (326-401)||(33173862-33173939)
chr5 (326-367)||(20539249-20539290)
chr5 (326-467)||(39603924-39604068)
chr5 (375-439)||(1010318-1010381)
[»] chr4 (38 HSPs)
chr4 (291-470)||(1794479-1794661)
chr4 (326-470)||(1587250-1587395)
chr4 (326-470)||(6348223-6348367)
chr4 (326-468)||(1829823-1829966)
chr4 (329-467)||(52963640-52963778)
chr4 (338-467)||(7708704-7708833)
chr4 (315-467)||(13165566-13165718)
chr4 (338-467)||(23203869-23203998)
chr4 (329-467)||(40792822-40792958)
chr4 (326-401)||(53435656-53435732)
chr4 (351-468)||(393566-393684)
chr4 (329-401)||(2311090-2311163)
chr4 (352-467)||(10168711-10168828)
chr4 (38-103)||(53701582-53701647)
chr4 (291-401)||(15449942-15450053)
chr4 (291-401)||(44498598-44498709)
chr4 (314-452)||(52239963-52240104)
chr4 (341-459)||(52241075-52241192)
chr4 (326-467)||(53205386-53205528)
chr4 (385-467)||(1188914-1188996)
chr4 (409-467)||(2310994-2311052)
chr4 (326-439)||(13533165-13533277)
chr4 (326-467)||(44503582-44503724)
chr4 (306-401)||(27850819-27850916)
chr4 (326-462)||(2312383-2312522)
chr4 (291-394)||(7053321-7053425)
chr4 (335-462)||(42810115-42810243)
chr4 (326-401)||(53432199-53432275)
chr4 (326-421)||(56085465-56085560)
chr4 (353-422)||(4871610-4871680)
chr4 (427-467)||(390288-390328)
chr4 (427-467)||(1831268-1831308)
chr4 (326-401)||(4714157-4714233)
chr4 (427-467)||(10167496-10167536)
chr4 (411-467)||(23201917-23201973)
chr4 (427-467)||(31965906-31965946)
chr4 (427-467)||(42871166-42871206)
chr4 (291-375)||(56000448-56000532)
[»] chr7 (27 HSPs)
chr7 (318-467)||(47454408-47454557)
chr7 (338-467)||(41079751-41079880)
chr7 (330-470)||(32256304-32256443)
chr7 (329-467)||(11501251-11501389)
chr7 (318-391)||(22691116-22691190)
chr7 (294-467)||(47059179-47059357)
chr7 (326-467)||(6173356-6173495)
chr7 (339-452)||(22337288-22337401)
chr7 (329-462)||(43459531-43459664)
chr7 (326-467)||(32255060-32255204)
chr7 (292-401)||(3413669-3413779)
chr7 (343-467)||(22538769-22538893)
chr7 (351-467)||(40812542-40812658)
chr7 (314-401)||(40811458-40811546)
chr7 (326-467)||(43460725-43460868)
chr7 (326-439)||(9662141-9662253)
chr7 (342-420)||(44554687-44554764)
chr7 (326-422)||(669292-669387)
chr7 (428-468)||(30333355-30333395)
chr7 (427-470)||(33096937-33096980)
chr7 (300-401)||(40508515-40508618)
chr7 (301-467)||(47060354-47060520)
chr7 (329-422)||(35295816-35295909)
chr7 (326-405)||(4299951-4300031)
chr7 (335-467)||(13564150-13564284)
chr7 (326-401)||(22115067-22115143)
chr7 (326-401)||(40509637-40509713)
[»] chr8 (22 HSPs)
chr8 (329-467)||(42100013-42100151)
chr8 (338-467)||(41629779-41629908)
chr8 (329-466)||(32693902-32694039)
chr8 (326-470)||(32798434-32798580)
chr8 (291-468)||(22551077-22551254)
chr8 (328-467)||(30786747-30786888)
chr8 (294-401)||(42870952-42871060)
chr8 (329-452)||(13116416-13116539)
chr8 (329-422)||(32797257-32797350)
chr8 (291-452)||(45281056-45281219)
chr8 (408-467)||(28420159-28420219)
chr8 (375-467)||(42872143-42872234)
chr8 (291-401)||(14840767-14840878)
chr8 (315-421)||(24192555-24192661)
chr8 (315-421)||(24305160-24305266)
chr8 (329-467)||(45279751-45279889)
chr8 (315-422)||(9854772-9854879)
chr8 (428-467)||(6398503-6398542)
chr8 (329-468)||(44076267-44076409)
chr8 (408-467)||(28418877-28418937)
chr8 (426-462)||(29103563-29103599)
chr8 (291-375)||(34617066-34617150)
[»] scaffold0031 (2 HSPs)
scaffold0031 (291-470)||(125098-125281)
scaffold0031 (291-467)||(124040-124215)
[»] chr2 (19 HSPs)
chr2 (291-398)||(34513421-34513529)
chr2 (329-459)||(32470482-32470612)
chr2 (329-467)||(1083059-1083197)
chr2 (351-467)||(17460613-17460729)
chr2 (326-470)||(28562713-28562857)
chr2 (301-470)||(43033150-43033319)
chr2 (329-421)||(6028834-6028926)
chr2 (375-467)||(11317320-11317413)
chr2 (291-467)||(6030337-6030515)
chr2 (326-455)||(6032217-6032347)
chr2 (331-467)||(29219456-29219595)
chr2 (331-467)||(29332755-29332894)
chr2 (428-470)||(43034477-43034519)
chr2 (351-462)||(11316009-11316120)
chr2 (375-470)||(32469218-32469313)
chr2 (315-401)||(42641752-42641839)
chr2 (326-467)||(18616907-18617051)
chr2 (375-460)||(11547737-11547824)
chr2 (332-376)||(12095439-12095483)
[»] chr6 (8 HSPs)
chr6 (338-467)||(23397270-23397399)
chr6 (329-467)||(29380262-29380400)
chr6 (329-467)||(17839046-17839184)
chr6 (352-457)||(5186649-5186753)
chr6 (291-462)||(23392290-23392464)
chr6 (326-467)||(29381632-29381775)
chr6 (408-467)||(232245-232305)
chr6 (331-467)||(17837687-17837825)
[»] scaffold0034 (1 HSPs)
scaffold0034 (329-420)||(109652-109743)
[»] scaffold2071 (1 HSPs)
scaffold2071 (298-393)||(556-652)
[»] scaffold0077 (1 HSPs)
scaffold0077 (329-467)||(52663-52801)
[»] scaffold1152 (1 HSPs)
scaffold1152 (351-470)||(2404-2524)
[»] scaffold0219 (1 HSPs)
scaffold0219 (315-422)||(8083-8189)
[»] scaffold0201 (1 HSPs)
scaffold0201 (327-401)||(21264-21339)
[»] scaffold0013 (1 HSPs)
scaffold0013 (291-437)||(32672-32822)
[»] scaffold0118 (1 HSPs)
scaffold0118 (326-462)||(43476-43615)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 289 - 467
Target Start/End: Original strand, 50444565 - 50444743
Alignment:
Q  289 attagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactcttaaggttg 388  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50444565 attagacatgcataatccaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactcttaaggttg 50444664  T
Q  389 gtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  50444665 gtccaacatagacgttttggagttaaagttaacggtttggatttatttggcaatcggaggaaaaaatgagggaccaaaa 50444743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 50444279 - 50444422
Alignment:
Q  18 ctgtggagaagttgttaaggaggaagagaagaggtgcattattaagagaggatttaaaaatgaagattgagttgtaaagtgggtgaacggatctgtgtgt 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  50444279 ctgtggagaagttgttaaggaggaagagaagaggtggattattaagagaggatttaaaaatgaagattgagttgtaaagtgggtaaacagatctgtgtgt 50444378  T
Q  118 aaaattgtgagaatagatagattaatgggtttggttgggtggag 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50444379 aaaattgtgagaatagatagattaatgggtttggttgggtggag 50444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 421
Target Start/End: Complemental strand, 46110494 - 46110399
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaac 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||| ||||||||||||||    
T  46110494 aaaagatcaaacggttaaaattaacaaaattaataaggtctacgatggaccactcttaaggttggtccaccataga-tatttagagttaaagttaac 46110399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 334 - 470
Target Start/End: Complemental strand, 27814497 - 27814360
Alignment:
Q  334 aaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagtt-aaagttaacgatttggatt 431  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||| |||| |||||||||||||||||  ||| ||||| |||||||||  |  |||||    
T  27814497 aaacggttaaaattaacaaaattaataaggtttacgatggaccacttttaaagttggtccaccatagac-atttagagttaaaagttaaccgtcgggatt 27814399  T
Q  432 tatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    |||||| ||| | ||||||||||||||||||||||||||    
T  27814398 tatttggcaaacagaggaaaaaatgagggaccaaaaggt 27814360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 15072693 - 15072835
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaac-ga 423  Q
    ||||||||||||  || |||| || ||||||||||  ||||||| ||||| |||||| ||||||||||||||||||| |||  | |||||||||||| ||    
T  15072693 aaaagatcaaacaatttaaattaagaaaattaatagagtctacggtggaccactctttaggttggtccaccatagacatttgag-gttaaagttaacaga 15072791  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
      |||||||||||| ||| ||||||||||||| |||||||||||    
T  15072792 catggatttatttggcaaacggaggaaaaaataagggaccaaaa 15072835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 16964043 - 16963905
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||| |||| ||  ||| ||||||||||||||  |  |    
T  16964043 agatcgaagggttaaaattaacaaaattaataaggtctatgatggaccacttttaaggttggtccatcataaac-atttagagttaaagttaacagtcag 16963945  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
     ||||||||| ||| |||||||||| ||||||||| ||||    
T  16963944 catttatttggcaaacggaggaaaagatgagggactaaaa 16963905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 35943315 - 35943426
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggtt--aaaatgaacaaaattaataaggtctacgatgga-cactcttaaggtt 387  Q
    ||||| ||| |||||||||| ||||| ||| ||| ||||||||||||||||  ||||| || ||| ||||||||||||| | |||| |||||||||||||    
T  35943315 tagacctgcgtaattcaatggtcatcctttcaaa-aaaagatcaaacggttttaaaataaa-aaatttaataaggtctatggtggatcactcttaaggtt 35943412  T
Q  388 ggtccaccatagac 401  Q
    ||||||||||||||    
T  35943413 ggtccaccatagac 35943426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 48527775 - 48527652
Alignment:
Q  297 tgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccacc 395  Q
    |||||||| ||||| ||||| ||||||| |||||||||||| ||| |||| || | |||| ||||| |||| | ||||| |||||||| ||||||| |||    
T  48527775 tgcataatccaatggtcatcatttaaaa-aaaagatcaaacagtttaaattaaaataattgataagatctatggtggaccactcttaaagttggtcgacc 48527677  T
Q  396 atagacgttttggagttaaagttaac 421  Q
    |||||| ||| |||||||||||||||    
T  48527676 atagacattt-ggagttaaagttaac 48527652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 49802816 - 49802940
Alignment:
Q  343 aaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaa 441  Q
    |||| |||||||||||| ||||||||||| || |||| ||||||||||| ||||||||||  ||| ||||| ||||||||  |  ||||||||||| |||    
T  49802816 aaataaacaaaattaatgaggtctacgatagaccacttttaaggttggtacaccatagac-atttagagttgaagttaaccgtcgggatttatttggcaa 49802914  T
Q  442 tcggaggaaaaaatgagggaccaaaa 467  Q
     ||||| |||| ||||||||| ||||    
T  49802915 acggagaaaaagatgagggactaaaa 49802940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 41873875 - 41873950
Alignment:
Q  327 aaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    ||||||||||||||||||||  | ||||||||| | ||||| | ||||| ||||||||||||||||||||||||||    
T  41873875 aaagatcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccaccatagac 41873950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 52628855 - 52628921
Alignment:
Q  404 tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||| |||||| |||||| ||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  52628855 tttggggttaaacttaacggttgagatttatttggcaaacggaggaaaaaatgagggaccaaaaggt 52628921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 50442825 - 50442752
Alignment:
Q  318 tttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggt 390  Q
    ||||||||||||||||||| ||||||||| |  ||||||||||  ||||||||||||| |||||||| ||||||    
T  50442825 tttaaaacaaaagatcaaatggttaaaattattaaaattaatacagtctacgatggactactcttaaagttggt 50442752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 422
Target Start/End: Original strand, 18821632 - 18821738
Alignment:
Q  316 cttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaa 414  Q
    ||||||||||||||||||||||||||||| |  | |||||||||| | |||  | | || ||||||||||||| |||||||||||||  |||| ||||||    
T  18821632 cttttaaaacaaaagatcaaacggttaaattttaaaaaattaataggatctttggtagaccactcttaaggttagtccaccatagac-atttgaagttaa 18821730  T
Q  415 agttaacg 422  Q
    || |||||    
T  18821731 agataacg 18821738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 470
Target Start/End: Original strand, 45584960 - 45585057
Alignment:
Q  375 cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||||||| ||||| ||||||||||| |  |||||  ||||| |||||| |  ||||||||||| ||| ||||||||||| ||| ||||||||||||    
T  45584960 cactcttaaagttgggccaccatagacatcatttgggtttaaacttaacggtcaggatttatttggcaaacggaggaaaaagtgaaggaccaaaaggt 45585057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 14471069 - 14470989
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttt 405  Q
    ||||||||||||||| |||||  | ||||||||| | || || | ||||| ||||||||||||||||||| ||||||||||    
T  14471069 aaaagatcaaacggtcaaaatttaaaaaattaatgaagtttatggtggaccactcttaaggttggtccactatagacgttt 14470989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 12666003 - 12665944
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaag 384  Q
    |||||||||||||||| |||| ||||||||||||||| |||| | |||| ||||||||||    
T  12666003 aaaagatcaaacggtttaaattaacaaaattaataagatctatggtggaccactcttaag 12665944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 447
Target Start/End: Original strand, 30535573 - 30535694
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaac-ga 423  Q
    ||||||||| | ||||||||| || ||||| ||||||||||| | |||||  ||| ||| ||||||||||||||||| ||| | || |||||||||  ||    
T  30535573 aaaagatcagagggttaaaattaa-aaaataaataaggtctatggtggactatctataatgttggtccaccatagacattt-gaagctaaagttaataga 30535670  T
Q  424 tttggatttatttgacaatcggag 447  Q
    | |||||||||||||||| |||||    
T  30535671 tgtggatttatttgacaaacggag 30535694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 38281042 - 38280999
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacg 369  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  38281042 aaaagatcaaacggttaaaataaaaaaaattaataaagtctacg 38280999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 459
Target Start/End: Original strand, 44999329 - 44999499
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaa-aagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttg 388  Q
    ||||| ||| |||| ||||| ||||||||| ||| || ||||||||| |||| || | || | |||||||||| |||| | || || ||||||| | |||    
T  44999329 tagacttgcgtaatccaatggtcatcttttgaaaaaacaagatcaaatggtttaagttaaaataattaataagatctatggtgaaccactcttacgattg 44999428  T
Q  389 gtccaccatagacgttttggagttaaagttaac-gatttggatttatttgacaatcggaggaaaaaatgagg 459  Q
    ||||||||||||| |||  | |||||||||||| | |  ||||||||||| ||| | |||||||||||||||    
T  44999429 gtccaccatagacatttaag-gttaaagttaacagctagggatttatttggcaaacagaggaaaaaatgagg 44999499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 46467393 - 46467283
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||| | ||||||||||| ||||||||| | | || | ||||||||||| |||| || ||| |||||||  |||||| |||| |||| |||| |||||    
T  46467393 tagacacgtataattcaatggtcatctttttagaaaatatatcaaacggtttaaattaa-aaatttaataacatctacggtggatcacttttaatgttgg 46467295  T
Q  390 tccaccatagac 401  Q
    ||||||||||||    
T  46467294 tccaccatagac 46467283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 21507277 - 21507229
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac 375  Q
    |||||||||||||| | |||| || |||||||||||||||||||||||||    
T  21507277 aaaagatcaaacggctgaaattaa-aaaattaataaggtctacgatggac 21507229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 48492925 - 48492853
Alignment:
Q  342 aaaatgaacaaaattaataaggtctacgatggacactcttaaggttggtccaccatagacgttttggagttaaa 415  Q
    ||||| ||||||||||||||| |||||| |||||  |  ||| |||||||||||||||||  ||||||||||||    
T  48492925 aaaattaacaaaattaataagatctacggtggaccattataatgttggtccaccatagac-atttggagttaaa 48492853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 15233000 - 15232897
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||||||||||| ||||| |  |||||||||| |||| ||||||||||| | || || | |||||||| | |||| |||||| |||| |||| |||||    
T  15233000 tagacatgcataatccaatggttctcttttaaaa-aaaatatcaaacggttgatattaaaataattaataggatctatgatggaccacttttaaagttgg 15232902  T
Q  390 tccac 394  Q
    |||||    
T  15232901 tccac 15232897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 32693302 - 32693358
Alignment:
Q  317 ttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgg 373  Q
    |||||||||||||||| ||| | ||||| | || ||| |||||||||||||||||||    
T  32693302 ttttaaaacaaaagataaaatgcttaaatttaagaaatttaataaggtctacgatgg 32693358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 52078047 - 52078123
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagac 401  Q
    |||| |||||||||||||||| || | |||||||| | |||| | || | |||||||||||||||| ||||||||||    
T  52078047 aaaaaatcaaacggttaaaattaaaataattaataggatctatggtgtatcactcttaaggttggttcaccatagac 52078123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 18197675 - 18197534
Alignment:
Q  20 gtggagaagttgttaaggaggaagagaagaggtgcattattaagagaggatttaaaaatgaagattgagttgtaaagtgggtgaacggatctgtgtgtaa 119  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  18197675 gtggagaagttgttaaggaggaagagaataggtggattattaagagagtatttacaaatgaagattgagttgtaaagttggtgaacgaatctgagtgtaa 18197576  T
Q  120 aattgtgagaatagatagattaatgggtttggttgggtggag 161  Q
     |||||||||||||||||||||||||||||||||||||||||    
T  18197575 tattgtgagaatagatagattaatgggtttggttgggtggag 18197534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 289 - 470
Target Start/End: Complemental strand, 18197389 - 18197215
Alignment:
Q  289 attagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactcttaaggttg 388  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||       |||||||    
T  18197389 attagacatgtataatccaatggtcatcttttaaaacaaaagatgaagcggttaaaattaacaaaattaataaggtctatgatgga-------aaggttg 18197297  T
Q  389 gtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    || ||||||||| ||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||    
T  18197296 gttcaccatagatgttttggagttaaagttaacggtctggatttatttggcaaacggaggaaaaaatgagggaccaaaaggt 18197215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 34818295 - 34818158
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| |||||||||||| |||||||||||||||||||| ||| || || | ||||||||| || |||||||||  |||  ||||||||||||| ||| |    
T  34818295 agatcgaacggttaaaattaacaaaattaataaggtctatgatagatcatttttaaggttgatcaaccatagac-atttaaagttaaagttaactattgg 34818197  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaa 466  Q
    |||||||||| |||  |||||||||  ||||||||||||    
T  34818196 gatttatttggcaaatggaggaaaatctgagggaccaaa 34818158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 467
Target Start/End: Complemental strand, 10731098 - 10730956
Alignment:
Q  325 caaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacga 423  Q
    ||||||||| || | ||||||| ||||||||||||||||| || ||| ||| ||| ||||||||||| |||||||||| ||| | |||||||||||||      
T  10731098 caaaagatcgaatgattaaaattaacaaaattaataaggtatatgatagaccacttttaaggttggttcaccatagacattt-gaagttaaagttaacag 10731000  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |  ||||||||||| ||| ||||| ||||| ||| |||||||||    
T  10730999 tcgggatttatttggcaaacggagaaaaaagtgaaggaccaaaa 10730956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 41263847 - 41263709
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||  || ||| ||| ||||||||| |||||||||||  ||| | |||||||||||||  || |    
T  41263847 agatcgaatggttaaaattaacaaaattaataaggtctagaatagaccacttttaaggttgatccaccatagatatttag-agttaaagttaacacttgg 41263749  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||| ||||||| ||||| |||| |||| |||||||||    
T  41263748 gatttaattgacaaacggagaaaaagatgacggaccaaaa 41263709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 40244395 - 40244322
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagac 401  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  40244395 agatcaaagagttaaaattaacaaaattaataaggtctacgatggaccacttttaagtttggtccaccatagac 40244322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 3209873 - 3209943
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccata 398  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||||| | | |||||||||||||||||||    
T  3209873 agatcaaatggttaaaattaacaaaattaataaggtttacgatggactatttttaaggttggtccaccata 3209943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 467
Target Start/End: Complemental strand, 27838118 - 27837991
Alignment:
Q  339 gttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttg 437  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||  |||||| |||||||||  |||| |||| ||||||||  |  |||||||||||    
T  27838118 gttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtctaccatagac-atttgaagtt-aagttaacagtcaggatttatttg 27838021  T
Q  438 acaatcggaggaaaaaatgagggaccaaaa 467  Q
     ||| ||||||||||  |||||||| ||||    
T  27838020 gcaaacggaggaaaaggtgagggactaaaa 27837991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 42685114 - 42685013
Alignment:
Q  301 taattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatag 399  Q
    |||||||||| ||||||||| ||| || ||||||||||||| |||| || ||| |||||||||| || | |||| |||||||||| ||||| ||||||||    
T  42685114 taattcaatggtcatctttttaaaaaacagatcaaacggtttaaattaaaaaatttaataaggtttatggtggaccactcttaagcttggttcaccatag 42685015  T
Q  400 ac 401  Q
    ||    
T  42685014 ac 42685013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 467
Target Start/End: Original strand, 35372066 - 35372203
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||| |||| ||||  |||||||| |||||||  |||| |||| ||||||||  |  |    
T  35372066 agatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtccaacatagac-atttgaagtt-aagttaacagtaag 35372163  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| | ||||||||  |||||||| ||||    
T  35372164 gatttatttggcaaacagaggaaaaggtgagggactaaaa 35372203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 452
Target Start/End: Complemental strand, 38241114 - 38240992
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttgg 428  Q
    ||||| || ||||||||| ||||||||||||||| ||||||||||||  | || | |||||| ||||||||||  |||||||||||| |||||     ||    
T  38241114 agatcgaatggttaaaattaacaaaattaataagctctacgatggaccatttttaagttggttcaccatagac-atttggagttaaacttaacagccggg 38241016  T
Q  429 atttatttgacaatcggaggaaaa 452  Q
    ||||||||| ||| ||||||||||    
T  38241015 atttatttggcaaacggaggaaaa 38240992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 467
Target Start/End: Complemental strand, 3208648 - 3208555
Alignment:
Q  375 cactcttaaggttggtccaccatag-acgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||||||||||||  |   ||||| |||||| |||||| |  ||||||||||||||| ||||||||||||| ||||| |||||    
T  3208648 cactcttaaggttggtccaccataatatcatttggggttaaacttaacggtaaggatttatttgacaaacggaggaaaaaataagggatcaaaa 3208555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 7270546 - 7270467
Alignment:
Q  316 cttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccac 394  Q
    |||||||||||||||||||||| |||||| | || ||| |||||||| |||| | | || ||||||||||||||||||||    
T  7270546 cttttaaaacaaaagatcaaacagttaaagtcaaaaaagttaataagatctatggtagaccactcttaaggttggtccac 7270467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 421
Target Start/End: Original strand, 21074148 - 21074279
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttgg 389  Q
    ||||||||| | |||||||| ||||||||   || |||| |||||| |||||||||  | ||||||||||||||||| | |||||  ||| ||| |||||    
T  21074148 tagacatgcgtgattcaatggtcatctttcttaaaaaaatatcaaagggttaaaattgaaaaaattaataaggtctatggtggactatctataatgttgg 21074247  T
Q  390 tccaccatagacgttttggagttaaagttaac 421  Q
    ||||||||| || ||| || |||||| |||||    
T  21074248 tccaccatatacatttgggggttaaacttaac 21074279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 470
Target Start/End: Original strand, 38242468 - 38242564
Alignment:
Q  375 cactcttaaggttggtccaccatagacgt-tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||||||||||||||||||||||||| |  || |||||||| |||||  |  ||||||||||| ||| | ||  ||||| ||||||||||||||||    
T  38242468 cactcttaaggttggtccaccatagacatcatttgagttaaacttaactgtgaggatttatttggcaaacagataaaaaagtgagggaccaaaaggt 38242564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 40892379 - 40892319
Alignment:
Q  316 cttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggaca 376  Q
    ||||||||| | |||||||||| |||||||| || ||| |||||||| |||||||||||||    
T  40892379 cttttaaaatacaagatcaaacagttaaaattaaaaaatttaataagatctacgatggaca 40892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 467
Target Start/End: Original strand, 50810819 - 50810879
Alignment:
Q  408 gagttaaagttaacgatttg-gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||  |||| |||||||||| ||| |||||||||||||||||||| ||||    
T  50810819 gagttaaagttaacagtttgagatttatttggcaaacggaggaaaaaatgagggactaaaa 50810879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 50865045 - 50864985
Alignment:
Q  408 gagttaaagttaacgatttg-gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||  |||| |||||||||| ||| |||||||||||||||||||| ||||    
T  50865045 gagttaaagttaacagtttgagatttatttggcaaacggaggaaaaaatgagggactaaaa 50864985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 53622827 - 53622748
Alignment:
Q  375 cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaa 452  Q
    ||||||||||||||||||||||||||| |  ||||| |||||| |||||  || ||||||| ||| ||| ||||||||||    
T  53622827 cactcttaaggttggtccaccatagacatcatttggggttaaacttaaccgttgggatttagttggcaaacggaggaaaa 53622748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 40745384 - 40745466
Alignment:
Q  340 ttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacg 422  Q
    ||||||| ||||||||||||||||||||||||| | |||| ||||||||| | || |||| ||  |||||| ||||||||||||    
T  40745384 ttaaaattaacaaaattaataaggtctacgatgaaccacttttaaggttgatacatcataaac-atttggaattaaagttaacg 40745466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 461
Target Start/End: Complemental strand, 53613058 - 53612948
Alignment:
Q  351 aaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggagga 449  Q
    |||||||||||||||||| ||| || ||| |||| |||||| || ||||||| ||| | |||||||||||||| |  ||||||||||| ||| | |||||    
T  53613058 aaaattaataaggtctacaatgaaccacttttaaagttggttcatcatagacattt-gaagttaaagttaacggtcgggatttatttggcaaacagagga 53612960  T
Q  450 aaaaatgaggga 461  Q
    |||  |||||||    
T  53612959 aaatgtgaggga 53612948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 26887462 - 26887595
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || |||| |||| || ||||||||| ||||||||||| || |||| ||||||||||| |||||||||   |||| |||||||||||||  |  |    
T  26887462 agatcgaatggttgaaataaataaaattaatgaggtctacgatagaccacttttaaggttggtacaccataga-tatttgaagttaaagttaaccgtcag 26887560  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggac 462  Q
     |||||||||  || | |||||||| |||||||||    
T  26887561 aatttatttgggaaacagaggaaaagatgagggac 26887595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 53624266 - 53624406
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    ||||||||||| |||||||||  | ||||||||||||||||| | |||||  ||| ||| |||||||||||||| || ||| || ||||||  ||||  |    
T  53624266 aaaagatcaaaaggttaaaattga-aaaattaataaggtctatggtggactatctataatgttggtccaccatatacatttggg-gttaaacctaaccgt 53624363  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
     |||||||||||| ||| | ||| ||||| |||| ||||||||    
T  53624364 ctggatttatttggcaaaccgagaaaaaagtgagtgaccaaaa 53624406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 398
Target Start/End: Complemental strand, 35371132 - 35371048
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccata 398  Q
    |||||| ||| |||| ||||||  |||||||| || | |||||||| | |||| | ||||| |||||||||||||||||||||||    
T  35371132 tctttttaaaaaaaaaatcaaaaagttaaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccata 35371048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 467
Target Start/End: Original strand, 53194769 - 53194915
Alignment:
Q  321 aaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagtta 419  Q
    |||| |||| |||||| ||||||||| || ||||||||| | ||||| | |||||  ||| ||| ||  ||||||||||||| ||||| ||||||| |||    
T  53194769 aaaaaaaaaaatcaaatggttaaaataaa-aaaattaatgaagtctatggtggactatctataatgtgagtccaccatagacattttg-agttaaactta 53194866  T
Q  420 ac-gatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    || ||  |||||||||||| |||   ||||||||| |||||||||||||    
T  53194867 acagacatggatttatttggcaaatagaggaaaaagtgagggaccaaaa 53194915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 325089 - 325233
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||  ||| ||||||||||||||  |    
T  325089 aaaagatcaaacggttaaaattaacaaaattaataaggtctacgatggaccactattaaggttggtccaccatagac-atttagagttaaagttaacagt 325187  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
      ||||||||||| ||| ||||||||||  ||||||||||||||||    
T  325188 cgggatttatttggcaaacggaggaaaacttgagggaccaaaaggt 325233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 348 - 467
Target Start/End: Original strand, 30912088 - 30912207
Alignment:
Q  348 aacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcgga 446  Q
    |||||||||||||||||||| |||| || ||| |||||||||||||||||||||  ||| |||||||||||||||  || ||||||||||| ||| ||||    
T  30912088 aacaaaattaataaggtctatgatgtaccacttttaaggttggtccaccatagatattt-ggagttaaagttaacacttgggatttatttggcaaacgga 30912186  T
Q  447 ggaaaaaatgagggaccaaaa 467  Q
    | ||||  |||||||| ||||    
T  30912187 gaaaaaggtgagggactaaaa 30912207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 467
Target Start/End: Original strand, 22308667 - 22308844
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||||||||||| ||||| ||||||||| ||| || |||||||| |||| | || || ||| ||||||| ||||| | |||| |||||||||||| ||    
T  22308667 tagacatgcataatccaatggtcatctttttaaaaaacagatcaaatggtttacattaaaaaatttaataatgtctatggtggaccactcttaaggtagg 22308766  T
Q  390 tccaccatagacgttttggagttaaagttaacga-tttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||  ||||| |||||| ||||| |   |||||||||||| ||| ||||| ||||  |||||||| ||||    
T  22308767 tccaccatagac-atttggggttaaacttaacaaccatggatttatttggcaaacggagcaaaatgtgagggactaaaa 22308844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 1102859 - 1102736
Alignment:
Q  297 tgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccacc 395  Q
    |||||||| || || ||||| ||||||| |||||||||||||||| |||| || | |||||||||| |||| | ||||| |||||||||||||||| |||    
T  1102859 tgcataatccactggtcatcatttaaaa-aaaagatcaaacggtttaaattaaaataattaataagatctatggtggaccactcttaaggttggtctacc 1102761  T
Q  396 atagacgttttggagttaaagttaac 421  Q
    ||||||  ||||| ||||||||||||    
T  1102760 atagac-atttggggttaaagttaac 1102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 467
Target Start/End: Original strand, 27705202 - 27705361
Alignment:
Q  310 gatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgt--ttt 406  Q
    ||||||||||||| | |||| ||||||||||| |||| || || ||||||| | |||| | |||| |||| |||||||||||||||||||||| |  |||    
T  27705202 gatcatcttttaataaaaaatatcaaacggtttaaattaaaaatattaataggatctatggtggaccacttttaaggttggtccaccatagacatcattt 27705301  T
Q  407 ggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||| |||||||||||  | || ||||||||| |||  |||||||||  |||||||||||||    
T  27705302 gga-ttaaagttaactgtctgtatttatttggcaaaaggaggaaaatctgagggaccaaaa 27705361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 467
Target Start/End: Complemental strand, 324252 - 324109
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagtt-aaagttaacga 423  Q
    |||| ||||||||||||| || |||  ||||||||||||||| |||||| |||| |||| |||||||||||||||||  ||| ||||| |||||||||      
T  324252 aaaaaatcaaacggttaagattaacgcaattaataaggtctatgatggaccactattaaagttggtccaccatagac-atttagagttaaaagttaacag 324154  T
Q  424 tttggatttatttgacaatcgg-aggaaaaaatgagggaccaaaa 467  Q
    || | |||||||||| || ||| |||||||||||| |||||||||    
T  324153 ttggaatttatttgagaaacggaaggaaaaaatgaaggaccaaaa 324109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 467
Target Start/End: Complemental strand, 22047897 - 22047803
Alignment:
Q  375 cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||||| |||||||||||| |  ||| |||||||| |||||     ||||||||||| ||| |||||||||||||||||||||||||    
T  22047897 cactcttaaggttgatccaccatagacatcatttagagttaaacttaacagccaggatttatttggcaaacggaggaaaaaatgagggaccaaaa 22047803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 421
Target Start/End: Complemental strand, 30910990 - 30910858
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttgg 389  Q
    ||||||||| |||||||||| |  |||||||||  ||||  |||||||||| |||| || | |||||||| | |||| | ||||| ||||||||||||||    
T  30910990 tagacatgcctaattcaatggttctcttttaaagaaaaac-tcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttgg 30910892  T
Q  390 tccaccatagacgt--tttggagttaaagttaac 421  Q
    ||||||| |||| |  ||||| ||||||||||||    
T  30910891 tccaccaaagacatcatttggtgttaaagttaac 30910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 30857987 - 30857871
Alignment:
Q  351 aaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggagga 449  Q
    ||||||||||||||||  ||| ||| ||| |||||||||||||| ||||||| |||   |||||||||||||  ||  ||||||||||||||  ||||||    
T  30857987 aaaattaataaggtctctgatagaccacttttaaggttggtccatcatagacatttaa-agttaaagttaactgttaagatttatttgacaaaaggagga 30857889  T
Q  450 aaaaatgagggaccaaaa 467  Q
    |||  ||| |||||||||    
T  30857888 aaatctgaaggaccaaaa 30857871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 33173862 - 33173939
Alignment:
Q  326 aaaagatcaaacggttaaaatg-aacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    |||||||||||||||||||||  || ||||||||| | ||||| | | ||| ||||||||||||||||||||||||||    
T  33173862 aaaagatcaaacggttaaaatttaaaaaaattaatgaagtctatggtagaccactcttaaggttggtccaccatagac 33173939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 20539249 - 20539290
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtcta 367  Q
    |||||||||||||||| |||| || |||||||||||||||||    
T  20539249 aaaagatcaaacggtttaaattaaaaaaattaataaggtcta 20539290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 467
Target Start/End: Complemental strand, 39604068 - 39603924
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacg 422  Q
    |||| ||||||| ||| |||| || | |||||||| | |||| | |||| |||| |||||||||||| ||||||||| |  ||||| |||||| |||||     
T  39604068 aaaaaatcaaacagtttaaattaaaataattaataggatctatggtggatcacttttaaggttggtctaccatagacatcatttggggttaaacttaaca 39603969  T
Q  423 atttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
     |   |||||||||| ||| ||||||||||  |||||||||||||    
T  39603968 gtcatgatttatttggcaaacggaggaaaatttgagggaccaaaa 39603924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 1010318 - 1010381
Alignment:
Q  375 cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgac 439  Q
    |||||||||||||||||||||||| ||  ||||| ||||||||||||  |  |||||||||||||    
T  1010318 cactcttaaggttggtccaccatacac-atttggggttaaagttaaccgtcgggatttatttgac 1010381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 291 - 470
Target Start/End: Complemental strand, 1794661 - 1794479
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||| ||||||||||||| ||||||||| ||| ||  |||||||||||| |||| || ||| ||||||||||||| | |||| |||||||||||||||    
T  1794661 tagacacgcataattcaatggtcatctttttaaaaaattgatcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttgg 1794562  T
Q  390 tccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||||||| || |  |||||  ||||| |||||  || ||||||||||||||| | ||||||||| ||||||| ||||||||    
T  1794561 tccaccatatacatcatttgggattaaacttaaccgttaggatttatttgacaaacagaggaaaaagtgagggatcaaaaggt 1794479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 1587395 - 1587250
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgg-acactcttaaggttggtccaccatagacgttttggagtt-aaagttaacga 423  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||| ||||| |||| ||||||| || ||||||  ||| ||||| ||||||||| |    
T  1587395 aaaagatcaaacggttaagattaacaaaattaataaggtatacgatggaacacttttaaagttggtctactatagac-atttagagttaaaagttaacca 1587297  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    |  ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  1587296 tcgggatttatttggcaaacggaggaaaaagtgagggaccaaaaggt 1587250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 6348367 - 6348223
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    ||||||||||| ||||||||| |  || |||||||||||||||| ||||| ||||||||||||||||||||||||||  ||||  |||||| ||||| ||    
T  6348367 aaaagatcaaagggttaaaattagaaatattaataaggtctacggtggaccactcttaaggttggtccaccatagac-atttgaggttaaacttaaccat 6348269  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
      | ||||||||||||| | ||||||||| ||||| ||||||||||    
T  6348268 cagaatttatttgacaaacagaggaaaaagtgaggaaccaaaaggt 6348223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 468
Target Start/End: Complemental strand, 1829966 - 1829823
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagtt-aaagttaacga 423  Q
    |||| |||||| |||||| || || |||||||||||||||||||||||| |||| |||| |||||||||| ||||||  ||| ||||| |||||||||      
T  1829966 aaaaaatcaaatggttaagattaataaaattaataaggtctacgatggaccacttttaaagttggtccacgatagac-atttagagttaaaagttaacag 1829868  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaag 468  Q
    |  | ||||||||||||| || |||||||| |||||||| |||||    
T  1829867 tcggaatttatttgacaaacgtaggaaaaagtgagggactaaaag 1829823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 52963778 - 52963640
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||  |||||| |||  |||||||| ||||||| ||| |||||| ||||||||||||||| ||| |||||||||||||||  |       
T  52963778 agatctaaaggttaaaactaacaaatttatgaaggtctatgatggaccacttttaaggctggtccaccatagacattt-ggagttaaagttaacagtcga 52963680  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||||| ||||| ||||  |||||||||||||    
T  52963679 gatttatttgacaaacggagaaaaacttgagggaccaaaa 52963640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 467
Target Start/End: Original strand, 7708704 - 7708833
Alignment:
Q  338 ggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttattt 436  Q
    ||||| ||| |||||||||||||||||||| |||| | |||| |||||||||||||||||||||   ||| ||||||||||||||  || ||||||||||    
T  7708704 ggttagaattaacaaaattaataaggtctatgatgtaccacttttaaggttggtccaccataga-tatttagagttaaagttaacacttgggatttattt 7708802  T
Q  437 gacaatcggaggaaaaaatgagggaccaaaa 467  Q
    | ||| | ||| ||||  |||||||| ||||    
T  7708803 ggcaaacagagaaaaaggtgagggactaaaa 7708833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 467
Target Start/End: Complemental strand, 13165718 - 13165566
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagtta 413  Q
    |||||||||| |||||||||||||||| |||| || | ||||||| | ||||| | ||||| |||||||||||||||||||||||||   |||| |||||    
T  13165718 tcttttaaaa-aaaagatcaaacggtttaaattaaaataattaatgaagtctatggtggaccactcttaaggttggtccaccataga-aatttgaagtta 13165621  T
Q  414 aagttaac-gatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    || ||||| |    ||||||||||||||| |||||||||| |||| |||| ||||    
T  13165620 aacttaacagtcaaggatttatttgacaaacggaggaaaagatgaaggacgaaaa 13165566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 467
Target Start/End: Original strand, 23203869 - 23203998
Alignment:
Q  338 ggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttattt 436  Q
    ||||||||| ||||||||||||||||||||| || || |||| ||||||||| |||||||||||   ||| |||||||||||||   || ||||||| ||    
T  23203869 ggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatccaccataga-tatttagagttaaagttaatacttgggatttaatt 23203967  T
Q  437 gacaatcggaggaaaaaatgagggaccaaaa 467  Q
    | ||| ||||| |||| |||| |||||||||    
T  23203968 ggcaaacggagaaaaagatgacggaccaaaa 23203998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 40792958 - 40792822
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| ||||| |||||| || |||||||||||||||||| || || |||| ||||||||||||||| ||||||  |||  |||||||||||||  |  |    
T  40792958 agatcgaacggataaaattaagaaaattaataaggtctaccatagaccacttttaaggttggtccactatagac-atttaaagttaaagttaac--tcgg 40792862  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| ||||| ||||  |||||||||||||    
T  40792861 gatttatttggcaaacggagaaaaatctgagggaccaaaa 40792822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 53435656 - 53435732
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagac 401  Q
    |||||||||||||||||||||  | ||||||||| | ||||||| |||| ||||||||||||||||| |||||||||    
T  53435656 aaaagatcaaacggttaaaatttaaaaaattaatgaagtctacggtggaccactcttaaggttggtctaccatagac 53435732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 468
Target Start/End: Original strand, 393566 - 393684
Alignment:
Q  351 aaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaac-gatttggatttatttgacaatcggagg 448  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||| ||  ||| || ||||||||||| |    ||||||||||| ||| |||||     
T  393566 aaaattaataaggtctacgatggaccacttttaaggttggtccactataaac-atttagaattaaagttaacagtccgggatttatttggcaaacggaga 393664  T
Q  449 aaaaaatgagggaccaaaag 468  Q
    ||||| ||||||||||||||    
T  393665 aaaaagtgagggaccaaaag 393684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 2311163 - 2311090
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagac 401  Q
    ||||| || ||||||||| ||||| |||||||||||||||||| || |||| ||||| ||||||||||||||||    
T  2311163 agatcgaatggttaaaattaacaatattaataaggtctacgatagaccacttttaagattggtccaccatagac 2311090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 10168711 - 10168828
Alignment:
Q  352 aaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaac-gatttggatttatttgacaatcggagga 449  Q
    ||||||||||||| |||| |||||  ||| ||| ||||||||||||||||| ||| || |||||||||||| |   |||||||||||| ||| |||||||    
T  10168711 aaattaataaggtgtacggtggaccatctataatgttggtccaccatagacatttgggggttaaagttaactgtcatggatttatttggcaaacggagga 10168810  T
Q  450 aaaaatgagggaccaaaa 467  Q
    |||  |||||||| ||||    
T  10168811 aaatgtgagggactaaaa 10168828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 53701582 - 53701647
Alignment:
Q  38 aggaagagaagaggtgcattattaagagaggatttaaaaatgaagattgagttgtaaagtgggtga 103  Q
    |||| ||||||| ||| |||||| || |||||||||||||||||||||| ||||| ||||||||||    
T  53701582 aggacgagaagatgtgtattatttagggaggatttaaaaatgaagattgggttgtgaagtgggtga 53701647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 15449942 - 15450053
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttgg 389  Q
    ||||||||||| ||  || ||||||||||||| | |||||| ||||| ||| |||| || || ||||||| | |||| | ||||| ||||||||||||||    
T  15449942 tagacatgcatgatctaacgatcatcttttaataaaaaagagcaaacagtttaaattaaaaatattaataggatctatggtggaccactcttaaggttgg 15450041  T
Q  390 tccaccatagac 401  Q
    ||||| ||||||    
T  15450042 tccacgatagac 15450053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 44498709 - 44498598
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttgg 389  Q
    ||||||||| ||||  |||| ||||||||||| | |||| |||||||||||  ||| || | |||||||| | |||| | ||||| |||||||||||||     
T  44498709 tagacatgcgtaatctaatggtcatcttttaagaaaaaaaatcaaacggttttaattaaaataattaataggatctatggtggaccactcttaaggttga 44498610  T
Q  390 tccaccatagac 401  Q
    ||||||||||||    
T  44498609 tccaccatagac 44498598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 452
Target Start/End: Complemental strand, 52240104 - 52239963
Alignment:
Q  314 atcttttaa-aacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttgga 409  Q
    ||||||||| || |||| ||||||||||| |||| || || ||||||| | |||| | ||||| |||||||||||||||||||||||||| |  |||||     
T  52240104 atcttttaataaaaaaaaatcaaacggtttaaattaaaaatattaataggatctatggtggaccactcttaaggttggtccaccatagacatcatttgg- 52240006  T
Q  410 gttaaagttaacgatttggatttatttgacaatcggaggaaaa 452  Q
    ||||||||||||  || | ||||||||| ||| ||||| ||||    
T  52240005 gttaaagttaacccttggaatttatttggcaaacggagaaaaa 52239963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 459
Target Start/End: Original strand, 52241075 - 52241192
Alignment:
Q  341 taaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgac 439  Q
    |||||| ||||||| ||||||||||||  |||||| ||| |||||| ||||| ||||||||  ||| |||||||||||||||| |  | ||||||||| |    
T  52241075 taaaattaacaaaactaataaggtctatcatggaccacttttaaggatggtc-accatagatattt-ggagttaaagttaacggtcggaatttatttggc 52241172  T
Q  440 aatcggaggaaaaaatgagg 459  Q
    || |||||||||| ||||||    
T  52241173 aaacggaggaaaagatgagg 52241192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 53205386 - 53205528
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaac-ga 423  Q
    ||||||||||| ||||||||| ||||||||| |||| |||||||  ||||  ||| ||| |||| |||||||||||| |||  || |||||||||||       
T  53205386 aaaagatcaaagggttaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatccaccatagacatttgaga-ttaaagttaacacc 53205484  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
      |||||||||||| ||| ||||||||||| |||||||| ||||    
T  53205485 catggatttatttggcaaacggaggaaaaagtgagggactaaaa 53205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 1188996 - 1188914
Alignment:
Q  385 gttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||| |||||||||| ||| ||  | |||||||||| |  ||||||||||| ||| ||||||||||| |||||||||||||    
T  1188996 gttggttcaccatagacatttagggttaaaagttaacgttcgggatttatttggcaaacggaggaaaaagtgagggaccaaaa 1188914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 467
Target Start/End: Complemental strand, 2311052 - 2310994
Alignment:
Q  409 agttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||||  || ||||||||||| ||||||||||||||  |||||||||||||    
T  2311052 agttaaagttaactgttaggatttatttggcaatcggaggaaaatctgagggaccaaaa 2310994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 439
Target Start/End: Original strand, 13533165 - 13533277
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    ||||||||||| |||||||||  | ||||||||||||||||| | |||||  ||| ||| |||||||||||||||||  |||| ||||||| |||||  |    
T  13533165 aaaagatcaaatggttaaaattga-aaaattaataaggtctatggtggactatctataatgttggtccaccatagac-atttgaagttaaatttaacagt 13533262  T
Q  425 ttggatttatttgac 439  Q
     ||||||||||||||    
T  13533263 ctggatttatttgac 13533277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 44503582 - 44503724
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactctt-aaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    |||| |||||| |||| |||| ||  |||||| ||||||||||| |||||  |||  || |||||| |||||||||| ||| ||  | |||||||||| |    
T  44503582 aaaaaatcaaatggtttaaattaagcaaattattaaggtctacggtggaccatctacaatgttggttcaccatagacatttagggttaaaagttaacggt 44503681  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
      ||||||||||| ||| | ||||||||| |||||||||||||    
T  44503682 cgggatttatttggcaaacagaggaaaaagtgagggaccaaaa 44503724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 401
Target Start/End: Original strand, 27850819 - 27850916
Alignment:
Q  306 caatgatcatcttttaaaacaaaaga-tcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    |||||||| || ||||||| |||||| |||||||||| |||| || | |||||||| | |||| | ||||| ||| ||||||||||||||||||||||    
T  27850819 caatgatcctcctttaaaaaaaaagaatcaaacggtttaaattaaaataattaataggatctatggtggaccacttttaaggttggtccaccatagac 27850916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 462
Target Start/End: Original strand, 2312383 - 2312522
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacg 422  Q
    |||| ||||||| ||| |||| || | |||||||| | |||| | ||||| ||| ||||| |||||||||||||||| |  ||||| |||||| ||||||    
T  2312383 aaaaaatcaaacagtttaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacg 2312482  T
Q  423 atttggatttatttgacaatcggaggaaaaaatgagggac 462  Q
     |   |||||||||| ||| ||||||||||| ||||||||    
T  2312483 gtcatgatttatttggcaaacggaggaaaaagtgagggac 2312522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 7053425 - 7053321
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    ||||||||||| ||  || |||| |||||||| | ||||||||||||| || |||| || |||||||||| | |||| | |||| |||||||||| ||||    
T  7053425 tagacatgcatgatctaacgatcctcttttaataaaaaagatcaaacgatttaaattaaaaaaattaataggatctatggtggatcactcttaagattgg 7053326  T
Q  390 tccac 394  Q
    |||||    
T  7053325 tccac 7053321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 462
Target Start/End: Original strand, 42810115 - 42810243
Alignment:
Q  335 aacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggattta 433  Q
    ||||||| |||| || ||| ||||||||||||| | ||||| ||||||||| ||||| |||||||||| | | || |||||| |||||     |||||||    
T  42810115 aacggtttaaattaaaaaatttaataaggtctatggtggactactcttaagattggttcaccatagacatctgggggttaaacttaacaccaaggattta 42810214  T
Q  434 tttgacaatcggaggaaaaaatgagggac 462  Q
    |||| ||| ||||||||||  ||||||||    
T  42810215 tttggcaaacggaggaaaatgtgagggac 42810243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 53432275 - 53432199
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatg-gacactcttaaggttggtccaccatagac 401  Q
    |||||||||||||||||||||  | |||||||||||||| || | || | ||||||||| |||||| ||||||||||    
T  53432275 aaaagatcaaacggttaaaattgaaaaaattaataaggtgtatggtgagccactcttaaagttggttcaccatagac 53432199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 421
Target Start/End: Complemental strand, 56085560 - 56085465
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaac 421  Q
    |||| ||||||||||| |||| || | |||||||| | |||| | ||||| |||||||||||| |||||||||||||  ||||| ||||||||||||    
T  56085560 aaaaaatcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttagtccaccatagac-atttggggttaaagttaac 56085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 4871680 - 4871610
Alignment:
Q  353 aattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacg 422  Q
    |||||||| | |||||| ||||| |||||| ||||||||||||||||||| |||  | |||||||||||||    
T  4871680 aattaataggatctacggtggaccactctttaggttggtccaccatagacatttgagggttaaagttaacg 4871610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 390328 - 390288
Alignment:
Q  427 ggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||| ||| |||||||| ||||||||||||||||    
T  390328 ggatttatttggcaaacggaggaagaaatgagggaccaaaa 390288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 1831268 - 1831308
Alignment:
Q  427 ggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||| ||  ||||||||||||||||||||||||    
T  1831268 ggatttatttgaaaaatggaggaaaaaatgagggaccaaaa 1831308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 401
Target Start/End: Complemental strand, 4714233 - 4714157
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    ||||||||||| |||||||||  | || |||||| | ||||| | ||||| ||||||||||||| ||||||||||||    
T  4714233 aaaagatcaaatggttaaaatttaaaatattaatgaagtctatggtggaccactcttaaggttgatccaccatagac 4714157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 10167536 - 10167496
Alignment:
Q  427 ggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||| |||||||||| ||||||||| ||||    
T  10167536 ggatttatttgacaaacggaggaaaatatgagggactaaaa 10167496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 23201973 - 23201917
Alignment:
Q  411 ttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||| |||||| || ||||||||||| ||| ||||||||||  |||||||||||||    
T  23201973 ttaaacttaacggttgggatttatttggcaaacggaggaaaaggtgagggaccaaaa 23201917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 31965946 - 31965906
Alignment:
Q  427 ggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||| ||| ||||||||||| |||||||||||||    
T  31965946 ggatttatttggcaaacggaggaaaaagtgagggaccaaaa 31965906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 42871206 - 42871166
Alignment:
Q  427 ggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||| ||| ||||||||||| |||||||||||||    
T  42871206 ggatttatttggcaaacggaggaaaaagtgagggaccaaaa 42871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 56000532 - 56000448
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac 375  Q
    ||||||| || ||| ||| |||| |||||| || ||||| |||||| ||||||||| || ||| ||| ||||||||||| |||||    
T  56000532 tagacatacacaatccaacgatcctctttttaatcaaaatatcaaatggttaaaattaaaaaacttagtaaggtctacggtggac 56000448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 318 - 467
Target Start/End: Complemental strand, 47454557 - 47454408
Alignment:
Q  318 tttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaag 416  Q
    ||||||| |||| |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||    
T  47454557 tttaaaaaaaaaaatcaaacggttaaaattaataaaattaataaggtctacgatggaccactcttaaggttggtctaccatagac-atttagagttaaag 47454459  T
Q  417 ttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||   |  ||||||||||| ||| || || ||||  |||||||||||||    
T  47454458 ttaatagtcgggatttatttggcaaacgaagaaaaacttgagggaccaaaa 47454408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 338 - 467
Target Start/End: Original strand, 41079751 - 41079880
Alignment:
Q  338 ggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttattt 436  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||| |||| |||||||||||   ||||||||||||||||||| |  ||||||||||    
T  41079751 ggttaaaatcaacaaaattaataaggtctacgatggaccacttttaatgttgttccaccataga-tatttggagttaaagttaacggtagggatttattt 41079849  T
Q  437 gacaatcggaggaaaaaatgagggaccaaaa 467  Q
      ||| |||||||||| || |||||||||||    
T  41079850 agcaaacggaggaaaagataagggaccaaaa 41079880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 330 - 470
Target Start/End: Original strand, 32256304 - 32256443
Alignment:
Q  330 gatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttgg 428  Q
    |||| |||||||||||| |||||||| | |||||| ||| |||||| ||| |||| ||||||||||||||||| ||| | |||||||||||||| || |     
T  32256304 gatcgaacggttaaaattaacaaaat-attaaggtttacaatggaccacttttaatgttggtccaccatagacattt-gaagttaaagttaacggttgga 32256401  T
Q  429 atttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||||||| |||  |||||||||| ||||||||||||||||    
T  32256402 atttatttggcaaatggaggaaaaagtgagggaccaaaaggt 32256443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 11501389 - 11501251
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||  |||| |||||||||||||  |  |    
T  11501389 agatcgaatggttaaaattaacaaaattaataaggtctacaatgaaccacttttaaggttggtccaccatagac-atttgaagttaaagttaacagtcgg 11501291  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| |||  |||||||||  |||||||| ||||    
T  11501290 gatttatttggcaaatggaggaaaaggtgagggactaaaa 11501251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 22691190 - 22691116
Alignment:
Q  318 tttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtc 391  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||||| ||||||    
T  22691190 tttaaaacaaaagatcaaacggttaaaataaacaaaatttataaggtatacgatggaccactcttaagattggtc 22691116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 467
Target Start/End: Complemental strand, 47059357 - 47059179
Alignment:
Q  294 acatgcataattcaatgatcatcttttaaaacaaa-agatcaaacggttaaaatgaacaaaa--ttaataaggtctacgatggac-actcttaaggttgg 389  Q
    |||||| |||| ||||| ||||| ||| ||| ||| ||||||||||||| |||| || ||||  ||||||||||||| | ||| | |||||||||||||     
T  47059357 acatgcgtaatccaatggtcatccttttaaataaacagatcaaacggtttaaattaaaaaaaaattaataaggtctatggtgggctactcttaaggttgc 47059258  T
Q  390 tccaccatagacgttttggag--ttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||| ||||||||  ||||| |||||| |  ||||||||||| ||| ||||||||||| ||||||| |||||    
T  47059257 tccaccatagac-ttttggagggttaaacttaacggtcaggatttatttggcaaacggaggaaaaagtgagggatcaaaa 47059179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 6173356 - 6173495
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    |||| ||||||| ||||| || |||||||||| ||||||||||||||||| ||| |||| |||||||||| |||||  ||| | ||||||||||||  |     
T  6173356 aaaaaatcaaacagttaagattaacaaaatta-taaggtctacgatggaccacttttaaagttggtccactatagatatttag-agttaaagttaat-ag 6173452  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
     |||||||||||| ||| ||||||||||| |||||||||||||    
T  6173453 atggatttatttggcaaacggaggaaaaagtgagggaccaaaa 6173495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 339 - 452
Target Start/End: Original strand, 22337288 - 22337401
Alignment:
Q  339 gttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttg 437  Q
    |||||||| |||||||||||||||||||||| || || ||  ||||||||||||||||||||||  |||| ||||||| |||||| |  |||||||||||    
T  22337288 gttaaaattaacaaaattaataaggtctacggtgtactacatttaaggttggtccaccatagac-atttgaagttaaatttaacggtcaggatttatttg 22337386  T
Q  438 acaatcggaggaaaa 452  Q
     ||| ||||||||||    
T  22337387 gcaaacggaggaaaa 22337401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 43459664 - 43459531
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||||||| | || | ||||||||| ||||||||||||  |||||||||||| |||||          
T  43459664 agatcgaatggttaaaattaacaaaattaataaggtctacgatgtaccatttttaaggttgatccaccatagac-atttggagttaaacttaacagccga 43459566  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggac 462  Q
    |||||||||| ||| |||||||||| |||||||||    
T  43459565 gatttatttggcaaacggaggaaaacatgagggac 43459531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 467
Target Start/End: Complemental strand, 32255204 - 32255060
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacg 422  Q
    |||| ||||||||||| |||| || | |||||||| | |||| | ||||| ||||||||||||||||||||||| || |  ||||| |||||| |||||     
T  32255204 aaaaaatcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccataaacatcatttggggttaaacttaacc 32255105  T
Q  423 atttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
     |  ||||||||||| ||| ||||||||||| ||||||| |||||    
T  32255104 gtcgggatttatttggcaaacggaggaaaaagtgagggatcaaaa 32255060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 3413779 - 3413669
Alignment:
Q  292 agacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggt 390  Q
    ||||| ||||||||||||||| ||||||| |   || ||||||||||||||||||  | ||||||||| | ||||| | ||||| ||||||||| ||| |    
T  3413779 agacacgcataattcaatgatgatctttttagcaaacagatcaaacggttaaaatttaaaaaattaatgaagtctatggtggacaactcttaagattgat 3413680  T
Q  391 ccaccatagac 401  Q
    |||||||||||    
T  3413679 ccaccatagac 3413669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 22538769 - 22538893
Alignment:
Q  343 aaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaa 441  Q
    |||| |||||||||||| ||||||||||| || | || |||| |||||| |||||||||   ||||||||||||||||||  |   |||||||||| |||    
T  22538769 aaataaacaaaattaatgaggtctacgatagaccgcttttaatgttggtacaccataga-tatttggagttaaagttaaccgtcgagatttatttggcaa 22538867  T
Q  442 tcggaggaaaaaatgagggaccaaaa 467  Q
     |||||||||| ||||||||| ||||    
T  22538868 acggaggaaaagatgagggactaaaa 22538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 40812542 - 40812658
Alignment:
Q  351 aaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggagga 449  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||| |    |||||||||||||| |||  |  |||| |||||||||| | |||||    
T  40812542 aaaattaataagatctacgatggatcacttttaaggttggtccaccat-ggttatttggagttaaagtaaacagtcgggatatatttgacaaacagagga 40812640  T
Q  450 aaaaatgagggaccaaaa 467  Q
    ||| |||||||| |||||    
T  40812641 aaatatgagggagcaaaa 40812658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 40811546 - 40811458
Alignment:
Q  314 atcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    ||||||||| | |||||||||||||||| |||| || || |||||||   |||| | ||||| ||||||||||||||||||||||||||    
T  40811546 atcttttaataaaaaagatcaaacggtttaaattaaaaatattaatagaatctatggtggaccactcttaaggttggtccaccatagac 40811458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 43460725 - 43460868
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt-tttggagttaaagttaacga 423  Q
    ||||||||||| |||| |||| || | |||||||| | |||| | ||||| |||||||| ||||||||||||||||| |  || |||||||| |||||      
T  43460725 aaaagatcaaagggtttaaattaaaataattaataggatctatggtggaccactcttaaagttggtccaccatagacataatttgagttaaacttaactg 43460824  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |  ||||||||||| |||  |||||||||| |||||||| ||||    
T  43460825 tgaggatttatttggcaaatggaggaaaaagtgagggactaaaa 43460868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 439
Target Start/End: Original strand, 9662141 - 9662253
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    ||||||||||| |||||||||  | ||||||||||||||||| | |||||  ||| ||| |||||||||||||||||  |||| ||||||| |||||  |    
T  9662141 aaaagatcaaatggttaaaattga-aaaattaataaggtctatggtggactatctataatgttggtccaccatagac-atttgaagttaaatttaacagt 9662238  T
Q  425 ttggatttatttgac 439  Q
     ||||||||||||||    
T  9662239 ctggatttatttgac 9662253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 420
Target Start/End: Original strand, 44554687 - 44554764
Alignment:
Q  342 aaaatgaacaaaattaataaggtctacgatggacactcttaaggttggtccaccatagacgttttggagttaaagttaa 420  Q
    ||||| ||||||||||||||| |||||| |||||  |  ||| |||||||||||||||||  |||||||||||||||||    
T  44554687 aaaattaacaaaattaataagatctacggtggaccattataatgttggtccaccatagac-atttggagttaaagttaa 44554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 422
Target Start/End: Original strand, 669292 - 669387
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacg 422  Q
    |||||||||||||||| |||| ||||||||||||| | |||| | |||| ||||||||| | |||||||||||||||  ||||  |||||||||||||    
T  669292 aaaagatcaaacggtttaaattaacaaaattaataggatctatggtggaccactcttaa-gatggtccaccatagac-atttgaggttaaagttaacg 669387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 30333395 - 30333355
Alignment:
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaag 468  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  30333395 gatttatttgacaaacggagaaaaaaatgagggaccaaaag 30333355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 33096980 - 33096937
Alignment:
Q  427 ggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  33096980 ggatttatttggcaaacggaggaaaaagtgagggaccaaaaggt 33096937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 40508618 - 40508515
Alignment:
Q  300 ataattcaatgatcat-cttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccat 397  Q
    ||||| |||||||||| ||||||||| || | ||||||||||||||||  | ||||||||| |  |||| | ||||| ||||||||| ||| ||||||||    
T  40508618 ataatccaatgatcattcttttaaaaaaacatatcaaacggttaaaatttaaaaaattaatgaaatctatggtggacaactcttaagattgatccaccat 40508519  T
Q  398 agac 401  Q
    ||||    
T  40508518 agac 40508515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 467
Target Start/End: Original strand, 47060354 - 47060520
Alignment:
Q  301 taattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatag 399  Q
    |||||||||| ||||| ||| ||| || | |||||||| ||||| |  | ||| ||||||||||||| | ||||| | |||||||||||||||||||||     
T  47060354 taattcaatggtcatccttttaaaaaacaaatcaaacgattaaattttaaaaatttaataaggtctatggtggactattcttaaggttggtccaccatat 47060453  T
Q  400 acgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||  ||||| |||||| |||||  |  ||||||||||| ||| ||||  |||   |||||||||||||    
T  47060454 ac-atttggtgttaaacttaacagtccggatttatttggcaaacggaaaaaagggtgagggaccaaaa 47060520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 422
Target Start/End: Complemental strand, 35295909 - 35295816
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacg 422  Q
    ||||||||||||| |||| || | |||||||| | |||| | ||||| ||||||||||||||||||||| |||   ||||| |||||||||||||    
T  35295909 agatcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccacaga-tatttggggttaaagttaacg 35295816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 4299951 - 4300031
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttt 405  Q
    ||||||||||||||| |||||  | ||||||||| | ||||| | ||| | ||||||||||||| ||||| ||||||||||    
T  4299951 aaaagatcaaacggtcaaaatttaaaaaattaatgaagtctatggtgggccactcttaaggttgatccactatagacgttt 4300031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 13564150 - 13564284
Alignment:
Q  335 aacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgtt--ttggagttaaagttaacgatttggatt 431  Q
    ||||||| |||| || | |||||||| | |||| | ||||| |||||||||| || |||||||||||| ||  |||| |||||| |||||| |  |||||    
T  13564150 aacggttcaaattaaaataattaataggatctatggtggaccactcttaaggatgatccaccatagacattatttggggttaaacttaacg-tcgggatt 13564248  T
Q  432 tatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||| ||| ||||||||||  |||||||| ||||    
T  13564249 tatttggcaaacggaggaaaatgtgagggactaaaa 13564284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 22115067 - 22115143
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    |||||||||||| || |||||  | ||||||||| | ||||| | ||||| ||||||||||||||||||| ||||||    
T  22115067 aaaagatcaaacagtcaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccactatagac 22115143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 401
Target Start/End: Original strand, 40509637 - 40509713
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    |||||||||||| || |||||  | ||||||||| | ||||| | ||||| ||||||||||||||||||| ||||||    
T  40509637 aaaagatcaaacagtcaaaatttaaaaaattaatgaagtctatggtggaccactcttaaggttggtccactatagac 40509713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 329 - 467
Target Start/End: Original strand, 42100013 - 42100151
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||  |||| |||||||||||||  |  |    
T  42100013 agatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaggttggtccaccaaagac-atttgaagttaaagttaacagtcgg 42100111  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    || ||||||| ||| |||||||||| |||||||| |||||    
T  42100112 gaattatttggcaaacggaggaaaatatgagggatcaaaa 42100151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 467
Target Start/End: Complemental strand, 41629908 - 41629779
Alignment:
Q  338 ggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttattt 436  Q
    ||||||||| ||||||||||||||||| ||||||| | |||| ||||||||||| |||||||||| |||||||||| ||||||||| |  ||||||||||    
T  41629908 ggttaaaattaacaaaattaataaggtatacgatgaaccacttttaaggttggttcaccatagac-ttttggagttcaagttaacggtcgggatttattt 41629810  T
Q  437 gacaatcggaggaaaaaatgagggaccaaaa 467  Q
    | ||| |||| |||||  ||||||| |||||    
T  41629809 ggcaaacggaagaaaacttgagggatcaaaa 41629779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 329 - 466
Target Start/End: Complemental strand, 32694039 - 32693902
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgat-ggacactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    |||||||||||||||||| || ||||||||||||||||| ||| || |||| |||||||||||||| |||| ||  |||  |||||||||||||  || |    
T  32694039 agatcaaacggttaaaattaataaaattaataaggtctatgataggccacttttaaggttggtccatcatatac-atttaaagttaaagttaactgttgg 32693941  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaa 466  Q
    |||||||||| ||| ||||||||||  ||| ||||||||    
T  32693940 gatttatttggcaaacggaggaaaatctgaaggaccaaa 32693902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 32798434 - 32798580
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgtt-ttggagttaaagttaacga 423  Q
    |||||||||||||||| |||| || | |||||||| | |||| | ||||| ||||||||||||| |||||||||||| |  || |||||||| |||||      
T  32798434 aaaagatcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttgatccaccatagacatcatttgagttaaacttaaccg 32798533  T
Q  424 tttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    |  ||||||||||||||| ||||| ||||| |||||||| |||||||    
T  32798534 tgaggatttatttgacaaacggagaaaaaattgagggactaaaaggt 32798580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 291 - 468
Target Start/End: Complemental strand, 22551254 - 22551077
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||||||| ||||||||  ||||||||| ||| || ||||||||||||| |||| |  ||| |||||||||| || | |||| |||| |||||||| |    
T  22551254 tagacatgcaaaattcaattgtcatctttttaaaaaacagatcaaacggtttaaattacaaaatttaataaggtttatggtggatcacttttaaggtttg 22551155  T
Q  390 tccaccatagacgttttggagttaaagttaacgat-ttggatttatttgacaatcggaggaaaaaatgagggaccaaaag 468  Q
    ||||||||||| | ||||| |||||| ||||| ||   ||||||||||| |||  ||| |||||| ||||||||||||||    
T  22551154 tccaccataga-gatttggggttaaacttaacaatccaggatttatttggcaaatgga-gaaaaagtgagggaccaaaag 22551077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 328 - 467
Target Start/End: Complemental strand, 30786888 - 30786747
Alignment:
Q  328 aagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagtt--aaagttaacgat 424  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||| |||| |||| |||| ||||||||||||  ||| |||||  |||||||||  |    
T  30786888 aagatcaaacggttaaaattaacaaaattaataaggtttatgatggaccacttttaaagttgatccaccatagac-atttagagttaaaaagttaacagt 30786790  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
      | ||||||||| ||| ||||| ||||| ||||||| |||||    
T  30786789 cggaatttatttggcaaacggagaaaaaagtgagggatcaaaa 30786747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 42871060 - 42870952
Alignment:
Q  294 acatgcataattcaatgatcatc-ttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtc 391  Q
    |||||| |||||||||| ||||| |||||||||| | |||||||||||| |||| |  ||| ||||||||||||||| |||| |||||||||| ||||||    
T  42871060 acatgcgtaattcaatggtcatccttttaaaacaca-gatcaaacggtttaaattacaaaatttaataaggtctacggtggaccactcttaagattggtc 42870962  T
Q  392 caccatagac 401  Q
    ||| ||||||    
T  42870961 cacaatagac 42870952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 452
Target Start/End: Complemental strand, 13116539 - 13116416
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||| ||||| ||||||||||||| |||||| ||| |||||| |  ||||||  ||||||||||||||||||  |  |    
T  13116539 agatcgaatggttaaaattaacaaaagtaatagggtctacgatggaccactctgaagattggtctattatagac-atttggagttaaagttaacagtcgg 13116441  T
Q  428 gatttatttgacaatcggaggaaaa 452  Q
    |||||||||| ||| ||||||||||    
T  13116440 gatttatttggcaaacggaggaaaa 13116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 422
Target Start/End: Complemental strand, 32797350 - 32797257
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacg 422  Q
    ||||| || ||||||||| ||||||||||||||||||||||||| | || | ||||||||| |||| |||||||  |||||||||||| ||||||    
T  32797350 agatcgaatggttaaaattaacaaaattaataaggtctacgatgaaccatttttaaggttgatccatcatagac-atttggagttaaacttaacg 32797257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 452
Target Start/End: Original strand, 45281056 - 45281219
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttgg 389  Q
    ||||||||||| ||  || | ||||||||||| | |||||||||||||||| |||| || || ||||||| | | || | | ||| ||||||||||||||    
T  45281056 tagacatgcatgatctaacgttcatcttttaataaaaaagatcaaacggtttaaattaaaaatattaataggatttatggtagaccactcttaaggttgg 45281155  T
Q  390 tccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaa 452  Q
    |||||| ||||| |  |||||| |||||||||||  || ||||||||||| |||  |||||||||    
T  45281156 tccaccgtagacatcatttgga-ttaaagttaactgttgggatttatttggcaaatggaggaaaa 45281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Original strand, 28420159 - 28420219
Alignment:
Q  408 gagttaaagttaacgatttg-gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||  |||| |||||||||||||| |||||||||||||||||||| ||||    
T  28420159 gagttaaagttaacagtttgagatttatttgacaaacggaggaaaaaatgagggactaaaa 28420219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 42872143 - 42872234
Alignment:
Q  375 cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||||| ||||||||| |||  | ||||||||||||  |  ||||||||||||||| ||||||||||| ||| |||| ||||    
T  42872143 cactcttaaggttggtctaccatagacatttgag-gttaaagttaaccgtcaggatttatttgacaaacggaggaaaaagtgaaggactaaaa 42872234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 401
Target Start/End: Original strand, 14840767 - 14840878
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||| ||||||||||||| ||||||||| | | || | ||||||||||| |||| || ||| ||||||||  ||| | |||| |||| |||| |||||    
T  14840767 tagacacgcataattcaatggtcatctttttagaaaacatatcaaacggtttaaattaaaaaatttaataagaactatggtggatcacttttaatgttgg 14840866  T
Q  390 tccaccatagac 401  Q
    ||||||||||||    
T  14840867 tccaccatagac 14840878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 24192555 - 24192661
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagtta 413  Q
    |||||||| | |||| |||||||||||  ||| || | |||||||| | |||| | ||||| |||||||||||||||||||||||||| ||| || ||||    
T  24192555 tcttttaagaaaaaaaatcaaacggttttaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccatagacatttagg-gtta 24192653  T
Q  414 aagttaac 421  Q
    ||||||||    
T  24192654 aagttaac 24192661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 421
Target Start/End: Complemental strand, 24305266 - 24305160
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagtta 413  Q
    ||||||||||||||||||||||  ||| || |  | |||||||||| | |||| ||| || ||||||||| ||||||||||||||||| ||| || ||||    
T  24305266 tcttttaaaacaaaagatcaaatagttgaagtttaaaaaattaataggatctaagatagatcactcttaatgttggtccaccatagacatttagg-gtta 24305168  T
Q  414 aagttaac 421  Q
    ||||||||    
T  24305167 aagttaac 24305160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 45279889 - 45279751
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| |||||||||| ||||||||||||| || |||| |||||  |||||||||||| ||  ||| ||||||||||||||  |  |    
T  45279889 agatcgaatggttaaaattaacaaaattattaaggtctacgatagaccacttttaagactggtccaccatatac-atttagagttaaagttaaccgtcgg 45279791  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| || |  ||||  |||||||||||||    
T  45279790 gatttatttgccaaacgaaaaaaaacttgagggaccaaaa 45279751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 422
Target Start/End: Original strand, 9854772 - 9854879
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagtta 413  Q
    |||||||||| |||| |||||| |||| |||| |  | |||||||| | |||| | ||||| |||||||| ||||||||||||||||| ||| || ||||    
T  9854772 tcttttaaaaaaaaa-atcaaatggtttaaattagaagaattaataggatctatggtggaccactcttaaagttggtccaccatagacatttgggggtta 9854870  T
Q  414 aagttaacg 422  Q
    |||||||||    
T  9854871 aagttaacg 9854879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 467
Target Start/End: Original strand, 6398503 - 6398542
Alignment:
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  6398503 gatttatttgacaaacggaggaaaaaatgagggactaaaa 6398542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 468
Target Start/End: Original strand, 44076267 - 44076409
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatt 425  Q
    |||||||| |||| |||| || |||||||||||| | || | |||| || | |||| |||| |||||||||||| |  ||||| |||||| |||||  |     
T  44076267 agatcaaatggtttaaattaaaaaaattaataagatttatggtggatcatttttaatgttgttccaccatagacatcatttggggttaaacttaactgta 44076366  T
Q  426 tggatttatttgacaatcggaggaaaaaatgagggaccaaaag 468  Q
     ||||||||||| ||| ||||||||||| ||||| ||||||||    
T  44076367 gggatttatttggcaaacggaggaaaaattgaggcaccaaaag 44076409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 28418937 - 28418877
Alignment:
Q  408 gagttaaagttaacgatttg-gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||  |||| |||||||||| ||| ||||||||||| |||||||| ||||    
T  28418937 gagttaaagttaacagtttgagatttatttggcaaacggaggaaaaagtgagggactaaaa 28418877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 29103599 - 29103563
Alignment:
Q  426 tggatttatttgacaatcggaggaaaaaatgagggac 462  Q
    |||||||||||  ||||||||||||||||||||||||    
T  29103599 tggatttatttagcaatcggaggaaaaaatgagggac 29103563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 34617066 - 34617150
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac 375  Q
    |||||||||| ||| ||| |||| |||||| ||  |||| |||||| ||||||||| || ||| ||| ||||||||||| |||||    
T  34617066 tagacatgcagaatccaacgatcctctttttaactaaaatatcaaatggttaaaattaaaaaatttagtaaggtctacggtggac 34617150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 470
Target Start/End: Original strand, 125098 - 125281
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaatt-aataaggtctacgatggac-actcttaaggttg 388  Q
    |||||| ||||||| ||||| ||||||||| ||| ||  ||||||| |||| |||| || |||||| ||||||||||| | ||||| ||| |||||||||    
T  125098 tagacacgcataatccaatggtcatctttttaaaaaactgatcaaagggtttaaattaaaaaaatttaataaggtctatggtggaccacttttaaggttg 125197  T
Q  389 gtccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||| |||| || |  ||||| |||||| |||||  || ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  125198 gtccatcatatacatcatttggggttaaacttaaccgttaggatttatttggcaaacggaggaaaaagtgagggaccaaaaggt 125281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 467
Target Start/End: Complemental strand, 124215 - 124040
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttgg 389  Q
    |||||||||||||| | ||| | ||||||| ||| || |||||||||| || |||| |||||  |||||| | |||| | ||||| ||||||||||||||    
T  124215 tagacatgcataatcctatggttatctttttaaaaaatagatcaaacgatttaaattaacaat-ttaatacgatctatggtggaccactcttaaggttgg 124117  T
Q  390 tccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||||   ||||| |||||| |||||  |  ||||||||||| ||| | ||||||||| |||||||||||||    
T  124116 tccaccataga-tatttggggttaaacttaaccgtaaggatttatttggcaaacagaggaaaaagtgagggaccaaaa 124040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 398
Target Start/End: Original strand, 34513421 - 34513529
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    |||||| ||||||| ||||||||||||||| ||| || ||||||||||||| |||| || ||||||||||||||||| | |||| |||||||||||||||    
T  34513421 tagacacgcataatccaatgatcatctttttaaaaaacagatcaaacggtttaaattaaaaaaattaataaggtctatggtggatcactcttaaggttgg 34513520  T
Q  390 tccaccata 398  Q
    || ||||||    
T  34513521 tcaaccata 34513529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 459
Target Start/End: Original strand, 32470482 - 32470612
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||| || | ||||||||  ||||||||||||  |||||||||||| |||||     |    
T  32470482 agatcgaatggttaaaattaacaaaattaataaggtctacgatggaccatttttaaggtttatccaccatagac-atttggagttaaacttaacagccgg 32470580  T
Q  428 gatttatttgacaatcggaggaaaaaatgagg 459  Q
    |||||||||||||| |||||||||| ||||||    
T  32470581 gatttatttgacaaacggaggaaaacatgagg 32470612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 1083197 - 1083059
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||| || || |||| ||||||||| |||||||||||   ||| ||||||||||||||  || |    
T  1083197 agatcgaatggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatccaccataga-tatttagagttaaagttaacacttgg 1083099  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||| ||| ||| ||||| |||| |||| |||||||||    
T  1083098 gatttaattggcaaacggagaaaaagatgacggaccaaaa 1083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 467
Target Start/End: Original strand, 17460613 - 17460729
Alignment:
Q  351 aaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggagga 449  Q
    ||||||||||||||||||||| ||| ||| ||||| |||||||||||||||| |||   |||||||||||||| |  |||||||||||  || |||||||    
T  17460613 aaaattaataaggtctacgatagaccacttttaagattggtccaccatagacatttaa-agttaaagttaacggtcgggatttatttgggaaacggagga 17460711  T
Q  450 aaaaatgagggaccaaaa 467  Q
    |||  |||||||||||||    
T  17460712 aaatttgagggaccaaaa 17460729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 28562713 - 28562857
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactct-taaggttggtccaccatagacgttttggagttaaagttaacgat 424  Q
    ||||||||||| |||||||||    ||| ||||||||||||| | |||||  ||| ||| |||||||||||||| |  ||| ||| ||||| |||||  |    
T  28562713 aaaagatcaaagggttaaaattggaaaatttaataaggtctatggtggactatctataatgttggtccaccatatatatttggga-ttaaacttaacagt 28562811  T
Q  425 ttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
     |||||||||||||||| ||||||||||| ||||||||||||||||    
T  28562812 ctggatttatttgacaaacggaggaaaaagtgagggaccaaaaggt 28562857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 470
Target Start/End: Complemental strand, 43033319 - 43033150
Alignment:
Q  301 taattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatag 399  Q
    |||| ||||| || ||||||| || ||| ||||| | |||| |||| || | |||||||| ||| || | ||||| |||||||||||||||| |||||||    
T  43033319 taatccaatggtcctcttttagaagaaatgatcacaaggtttaaattaaaataattaatagggtttatggtggaccactcttaaggttggtctaccatag 43033220  T
Q  400 acgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    || |||  | |||||| |||||     ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  43033219 acatttgag-gttaaacttaacatcgaggatttatttggcaaacggaggaaaaagtgagggaccaaaaggt 43033150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 421
Target Start/End: Complemental strand, 6028926 - 6028834
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaac 421  Q
    ||||| || ||||||||| |||||||||| |||||||||||||||| |||| |||||  |||||||||||| ||  ||| ||||||||||||||    
T  6028926 agatcgaatggttaaaattaacaaaattattaaggtctacgatggaccacttttaagactggtccaccatatac-atttagagttaaagttaac 6028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 467
Target Start/End: Original strand, 11317320 - 11317413
Alignment:
Q  375 cactcttaaggttggtccaccatagacgtt-ttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||||| ||||||||| |  || |||||||| |||||  |  ||||||||||| ||| ||||||||||| |||||||||||||    
T  11317320 cactcttaaggttggtctaccatagacatcatttgagttaaacttaactgtgaggatttatttgccaaacggaggaaaaattgagggaccaaaa 11317413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 467
Target Start/End: Original strand, 6030337 - 6030515
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttgg 389  Q
    ||||||||||| ||  || | ||||||||||| | |||||||||||||||| |||| || || ||||||| | |||| | | || |||||||||||||||    
T  6030337 tagacatgcatgatataacgttcatcttttaataaaaaagatcaaacggtttaaattaaaaatattaataggatctatggtagatcactcttaaggttgg 6030436  T
Q  390 tccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||| ||||| |  ||||| ||||||||||||  ||  |||||||||| |||   |||||||| |||| ||| |||||    
T  6030437 tccaccgtagacatcatttgg-gttaaagttaactgttgagatttatttggcaaatagaggaaaatatgaaggatcaaaa 6030515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 455
Target Start/End: Original strand, 6032217 - 6032347
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-ca-ctcttaaggttggtccaccatagacgttttggagttaaagttaacga 423  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||||| ||  |||| | ||||||| |||||||||  |||| ||||||||||||||     
T  6032217 aaaagatcaaacggctaaaattaattaaattaataaggtctacgatggatcatgtctt-atgttggtcaaccatagac-atttgaagttaaagttaacgg 6032314  T
Q  424 t-ttggatttatttgacaatcggaggaaaaaat 455  Q
    |  |||||||||||| ||| | |||||||||||    
T  6032315 tcatggatttatttggcaaacagaggaaaaaat 6032347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 467
Target Start/End: Complemental strand, 29219595 - 29219456
Alignment:
Q  331 atcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttg 427  Q
    ||||||||||| |||| || | |||||||| | |||| | ||||| ||| ||||| |||||||||||||||| |  ||||| |||||| |||||  || |    
T  29219595 atcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacagttgg 29219496  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| ||||||||||  |||||||| ||||    
T  29219495 gatttatttggcaaacggaggaaaaggtgagggactaaaa 29219456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 467
Target Start/End: Complemental strand, 29332894 - 29332755
Alignment:
Q  331 atcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttg 427  Q
    ||||||||||| |||| || | |||||||| | |||| | ||||| ||| ||||| |||||||||||||||| |  ||||| |||||| |||||  || |    
T  29332894 atcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccatagacatcatttggggttaaacttaacagttgg 29332795  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| ||||||||||  |||||||| ||||    
T  29332794 gatttatttggcaaacggaggaaaaggtgagggactaaaa 29332755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 470
Target Start/End: Original strand, 43034477 - 43034519
Alignment:
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  43034477 gatttatttgacaaacggaggaaaaagtgagggaccaaaaggt 43034519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 11316120 - 11316009
Alignment:
Q  351 aaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggagga 449  Q
    ||||||||||||||||||| |||| || | ||||||||| ||||||||||||  |||||| ||||| |||||     ||||||||||| ||| |||||||    
T  11316120 aaaattaataaggtctacggtggaccatttttaaggttgatccaccatagac-atttggaattaaacttaacagccgggatttatttggcaaacggagga 11316022  T
Q  450 aaaaatgagggac 462  Q
    |||  ||||||||    
T  11316021 aaacctgagggac 11316009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 470
Target Start/End: Complemental strand, 32469313 - 32469218
Alignment:
Q  375 cactcttaaggttggtccaccatagacgtt-ttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggaccaaaaggt 470  Q
    ||||||||| |||||||||||||| || |  || |||||||| ||||| ||  ||||||||||| ||| ||||||||||| ||| ||||||||||||    
T  32469313 cactcttaaagttggtccaccatatacataatttgagttaaacttaactataaggatttatttggcaa-cggaggaaaaagtgaaggaccaaaaggt 32469218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 42641752 - 42641839
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    |||||||||| |||||||||||| ||| |||| || | |||||||| | |||| | | ||| |||||||||||||| |||||||||||    
T  42641752 tcttttaaaaaaaaagatcaaacagtttaaattaaaataattaataggatctatggtagaccactcttaaggttggcccaccatagac 42641839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 18616907 - 18617051
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacg 422  Q
    |||| ||||||||||| |||| || | |||||||| | |||| | ||||| ||| |||||  ||||||||||||||| |  ||||| |||||| ||||      
T  18616907 aaaaaatcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagactggtccaccatagacatcatttggggttaaacttaata 18617006  T
Q  423 atttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
     || ||||||||||| ||| ||||||||||  |||||||| ||||    
T  18617007 gttgggatttatttggcaaacggaggaaaaggtgagggactaaaa 18617051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 460
Target Start/End: Complemental strand, 11547824 - 11547737
Alignment:
Q  375 cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgaggg 460  Q
    ||||| |||||||||||||  |||||| |  ||||| |||||| |||||  |  ||||||||||||||| || |||||||||||||||    
T  11547824 cactcctaaggttggtccatgatagacatcatttggggttaaacttaacagtcaggatttatttgacaaacgaaggaaaaaatgaggg 11547737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 12095483 - 12095439
Alignment:
Q  332 tcaaacggttaaaatgaacaaaattaataaggtctacgatggaca 376  Q
    |||||| |||||||| || ||| ||||||||||||||||||||||    
T  12095483 tcaaacagttaaaattaaaaaatttaataaggtctacgatggaca 12095439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 467
Target Start/End: Original strand, 23397270 - 23397399
Alignment:
Q  338 ggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttattt 436  Q
    ||||||||| ||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||  |||| ||||||| |||||| |  ||||||||||    
T  23397270 ggttaaaattaacaaaattaataaggtatacggtggactacttttaaggttggtccaccatagac-atttgaagttaaatttaacggtcgggatttattt 23397368  T
Q  437 gacaatcggaggaaaaaatgagggaccaaaa 467  Q
    | ||| ||||||||||  |||||||| ||||    
T  23397369 ggcaaacggaggaaaaggtgagggactaaaa 23397399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 29380400 - 29380262
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||  |||| ||||||| |||||| |  |    
T  29380400 agatcgaatggttaaaattaacaaaattaataaggtctacgatggactacttttaaggttgatccaccatatac-atttgaagttaaaattaacggtcgg 29380302  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| |||| |||||  |||||||| ||||    
T  29380301 gatttatttggcaaacggaagaaaaggtgagggactaaaa 29380262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 467
Target Start/End: Original strand, 17839046 - 17839184
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| || ||||||||| ||||||||||||||||||||| |||||| ||| ||||||||  ||||||||  ||  |||| ||||||| |||||| |  |    
T  17839046 agatcgaatggttaaaattaacaaaattaataaggtctacaatggactacttttaaggttaatccaccatctac-atttgaagttaaaattaacggtcgg 17839144  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| ||||||||||  |||||||| ||||    
T  17839145 gatttatttggcaaacggaggaaaaggtgagggactaaaa 17839184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 457
Target Start/End: Complemental strand, 5186753 - 5186649
Alignment:
Q  352 aaattaataaggtctacgatggacactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaa 451  Q
    |||||||||||||||||||| |||  | |||||||| || |||||||||  ||| | |||||||||||||| |  ||||||||||| ||| |||||||||    
T  5186753 aaattaataaggtctacgattgaccattttaaggtttgttcaccatagatattt-gaagttaaagttaacggtcgggatttatttggcaaacggaggaaa 5186655  T
Q  452 aaatga 457  Q
    | ||||    
T  5186654 agatga 5186649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 23392464 - 23392290
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaaaacaaaag-atcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttg 388  Q
    ||||| ||||||||  |||| | ||||||||||| ||||  ||||||||||| |||| || | |||||||| | |||| | ||||| ||| |||||||||    
T  23392464 tagacttgcataatctaatggttatcttttaaaaaaaaaatatcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaaggttg 23392365  T
Q  389 gtccaccatag-acgttttggagttaaagttaacgatttggatttatttgacaatcggaggaaaaaatgagggac 462  Q
     |||||| ||| |   ||||| |||||| |||||  || ||||||||||| ||| ||||||||||  ||||||||    
T  23392364 atccaccttagcatcatttggggttaaacttaacatttaggatttatttggcaaacggaggaaaaggtgagggac 23392290  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 467
Target Start/End: Original strand, 29381632 - 29381775
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgt--tttggagttaaagttaacg 422  Q
    |||| ||||||||||| |||| || | |||||||| | |||| | |||| ||||||||||||| |||||||| |||| |  ||||| |||||| |||||     
T  29381632 aaaaaatcaaacggttgaaattaaaataattaataggatctatggtggatcactcttaaggtttgtccaccacagacatcatttggggttaaacttaac- 29381730  T
Q  423 atttggatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
      |||||||||||||  || |||||||||| |||| |||| ||||    
T  29381731 tgttggatttatttggtaaacggaggaaaagatgaaggactaaaa 29381775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 232305 - 232245
Alignment:
Q  408 gagttaaagttaacgatttgg-atttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||||||  ||||| ||||||||| ||| ||||||||||| |||||||| ||||    
T  232305 gagttaaagttaacagtttgggatttatttggcaaacggaggaaaaagtgagggactaaaa 232245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 467
Target Start/End: Complemental strand, 17837825 - 17837687
Alignment:
Q  331 atcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacgatttg 427  Q
    ||||||||||| |||| || | |||||||| | |||| | ||||| |||||||| ||| ||||||||||||| |  ||||| |||||| |||||  || |    
T  17837825 atcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaatgtttgtccaccatagacatcatttggggttaaacttaactgtt-g 17837727  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    ||||||||||  || |||| ||||| ||||||||| ||||    
T  17837726 gatttatttggtaaacggaagaaaagatgagggactaaaa 17837687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 329 - 420
Target Start/End: Original strand, 109652 - 109743
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgttttggagttaaagttaa 420  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||||| ||  |||| ||||||||||||    
T  109652 agatcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccaccatatac-atttgaagttaaagttaa 109743  T

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Target: scaffold2071 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 556 - 652
Alignment:
Q  298 gcataattcaatgatcatcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtcca 393  Q
    ||||||| ||||| ||||||||| ||| || ||||||||||||| |||| || ||| ||||||||||||| | |||| |||||||||||||||||||    
T  556 gcataatccaatggtcatctttttaaaaaacagatcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtcca 652  T

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Target: scaffold0077 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 52801 - 52663
Alignment:
Q  329 agatcaaacggttaaaatgaacaaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgttttggagttaaagttaacgatttg 427  Q
    ||||| ||||| |||||| || |||||||||||||||||| || || || | ||||||||||||||||||| ||  |||  |||||||||||||  |  |    
T  52801 agatcgaacggataaaattaagaaaattaataaggtctaccatagaccatttttaaggttggtccaccatatac-atttaaagttaaagttaactgtcgg 52703  T
Q  428 gatttatttgacaatcggaggaaaaaatgagggaccaaaa 467  Q
    |||||||||| ||| ||||| ||||  |||||||||||||    
T  52702 gatttatttggcaaacggagaaaaatctgagggaccaaaa 52663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 470
Target Start/End: Original strand, 2404 - 2524
Alignment:
Q  351 aaaattaataaggtctacgatgga-cactcttaaggttggtccaccatagacgt-tttggagttaaagttaacgatttggatttatttgacaatcggagg 448  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||  || | ||||||||||||||||||  |  | |||||||||  || | ||||    
T  2404 aaaattaataaggtctacgatagaccacttttaaggttggtccaccat-tacatatttggagttaaagttaacagtcggaatttatttggaaaacagagg 2502  T
Q  449 aaaaaatgagggaccaaaaggt 470  Q
    ||||| | ||||||||||||||    
T  2503 aaaaactaagggaccaaaaggt 2524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 422
Target Start/End: Original strand, 8083 - 8189
Alignment:
Q  315 tcttttaaaacaaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggacactcttaaggttggtccaccatagacgttttggagttaa 414  Q
    |||||||||| |||  ||||||||||| |||| || | ||||||||   |||| ||||||| |||||||||||| ||||||||||||  ||||| |||||    
T  8083 tcttttaaaaaaaacaatcaaacggtttaaattaaaataattaatataatctatgatggaccctcttaaggttgatccaccatagac-atttggggttaa 8181  T
Q  415 agttaacg 422  Q
    | ||||||    
T  8182 aattaacg 8189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 21339 - 21264
Alignment:
Q  327 aaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagac 401  Q
    ||||||||||||||||||||  | ||||||||| | ||||| | ||||| ||||| ||||||||||||||||||||    
T  21339 aaagatcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactctgaaggttggtccaccatagac 21264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 437
Target Start/End: Complemental strand, 32822 - 32672
Alignment:
Q  291 tagacatgcataattcaatgatcatcttttaa--aacaaaagatcaaacggttaaaatgaacaaaat--taataaggtctacgatggac-actcttaagg 385  Q
    ||||||||||| ||  |||| || ||||||||  || |||||||||||||||| |||| || ||||   ||||| | |||| ||||||| |||| |||||    
T  32822 tagacatgcatgatctaatggtcctcttttaataaaaaaaagatcaaacggtttaaattaaaaaaaaaataataggatctatgatggaccactcctaagg 32723  T
Q  386 ttggtccaccatagacgttttggagttaaagttaacgatttggatttatttg 437  Q
    |||||||||||||||| |||  | ||||||||||||  || |||||||||||    
T  32722 ttggtccaccatagacatttaag-gttaaagttaacagttaggatttatttg 32672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 462
Target Start/End: Original strand, 43476 - 43615
Alignment:
Q  326 aaaagatcaaacggttaaaatgaacaaaattaataaggtctacgatggac-actcttaaggttggtccaccatagacgt--tttggagttaaagttaacg 422  Q
    |||| ||||||||||| |||| || | |||||||| | |||| | ||||| ||||||||| |||||||||||||||| |   |||| |||||| |||||     
T  43476 aaaaaatcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaagattggtccaccatagacatcacttggggttaaacttaacc 43575  T
Q  423 atttggatttatttgacaatcggaggaaaaaatgagggac 462  Q
     |  ||| ||||||| ||| ||||||||||| ||||||||    
T  43576 gtcaggacttatttggcaaacggaggaaaaagtgagggac 43615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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