View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0462_low_21 (Length: 206)

Name: NF0462_low_21
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0462_low_21
NF0462_low_21
[»] chr6 (10 HSPs)
chr6 (3-94)||(2954738-2954829)
chr6 (5-94)||(2996703-2996793)
chr6 (3-74)||(2938116-2938187)
chr6 (3-93)||(2935255-2935349)
chr6 (14-74)||(2974674-2974734)
chr6 (3-94)||(2929965-2930059)
chr6 (5-74)||(2983524-2983593)
chr6 (3-56)||(2927816-2927869)
chr6 (43-94)||(2965228-2965280)
chr6 (36-86)||(2986421-2986472)
[»] scaffold0024 (1 HSPs)
scaffold0024 (4-93)||(34573-34663)
[»] chr7 (1 HSPs)
chr7 (3-93)||(3339681-3339775)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 2954738 - 2954829
Alignment:
Q  3 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcatattattgctattagtattatc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2954738 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcaatgttgagttcatattattgctattagtattatc 2954829  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 2996793 - 2996703
Alignment:
Q  5 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 94  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996793 ttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2996703  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 2938116 - 2938187
Alignment:
Q  3 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 74  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2938116 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcata 2938187  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 2935255 - 2935349
Alignment:
Q  3 acttcaatcaatttgttctgtcttgcaagtagtacaa---gcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 93  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2935255 acttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattat 2935349  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 2974674 - 2974734
Alignment:
Q  14 tttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 74  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2974674 tttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcata 2974734  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 2929965 - 2930059
Alignment:
Q  3 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcat-attattgctattagtattatc 94  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||| ||||||| ||||  |||||||    
T  2929965 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatc 2930059  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 2983524 - 2983593
Alignment:
Q  5 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 74  Q
    ||||| || ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  2983524 ttcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcata 2983593  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 2927816 - 2927869
Alignment:
Q  3 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttct 56  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2927816 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 2965228 - 2965280
Alignment:
Q  43 tcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 94  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2965228 tcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2965280  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 2986421 - 2986472
Alignment:
Q  36 acaagcctcctagtgatttctttcattgttgagttcat-attattgctatta 86  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatta 2986472  T

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Target: scaffold0024 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 34663 - 34573
Alignment:
Q  4 cttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 93  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34663 cttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattat 34573  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 3339681 - 3339775
Alignment:
Q  3 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat----attattgctattagtattat 93  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    ||||||||| ||||||||||    
T  3339681 acttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattat 3339775  T

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