View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0462_low_3 (Length: 521)
Name: NF0462_low_3
Description: NF0462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0462_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 41739675 - 41739193
Alignment:
| Q |
11 |
ttatactaccatgttaagattattgaagcaatgagagacttgagttggtcttcaagaaataaaggttggtagcaattcttgttgaattgtccatgacttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
41739675 |
ttatactaccatgttaagattattgaagcaatgagagacttgagttggtcttcaagaaataaaggttggtagcaattcttgttgaagtgtgcatgacttg |
41739576 |
T |
|
| Q |
111 |
caccgtaccggtcattgtcgcattcaagaatccttgtttatgtcaatgcaagtttaggaacttgattgaacatttgattaatcgagcttaattttaaggt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41739575 |
caccgtaccggtcattgtcgcattcaagaatccttgtttatgtcaatgcaagtttaggaacttgattgaacatttgattaatcgagcttaattttaaggt |
41739476 |
T |
|
| Q |
211 |
tgattaaacattgaggcggtcaaacttaaacaattcacttgtattcataatactactagtattagttaagattcgaactcaatctattcaaatttcaaac |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41739475 |
tgataaaacattgaggcggtcaaacttaaacgattcacttgtattcataatactactagtattagttaagattcgaactcaatctattcaaatttcaaat |
41739376 |
T |
|
| Q |
311 |
ttaacttgagaccattaacaaatactagtttagtttgattccgtgcaactttcacttnnnnnnngaatgggactgcgatatgatcaaagcaagttgcgta |
410 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41739375 |
ttaacttgagaccaataacaaatactagtttagtttgattccgtgcaactttcacttaaaaaaagaatgggactgcgatatgatcaaagcaagttgcgta |
41739276 |
T |
|
| Q |
411 |
cttgcaagcatgccttgagccacaaaagggaaggaagcttcgatgctcgatacttaaatcaattaaacgcatttgtagattgt |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41739275 |
cttgcaagcatgccttgagccacaaaagggaaggaagcttcgatgctcgatacttaaatcaattaaacgcatttgtagattgt |
41739193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1520 times since January 2019
Visitors: 3457