View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0463_low_3 (Length: 360)
Name: NF0463_low_3
Description: NF0463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0463_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 30958580 - 30958899
Alignment:
| Q |
10 |
gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||| | |
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| T |
30958580 |
gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtctttctccttgtggagctggtaaacc |
30958679 |
T |
|
| Q |
110 |
atttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaa |
209 |
Q |
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|||| | ||| |||| | | || | | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
30958680 |
attttaccttaactgtaaggaaaataacatcactaccattctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaa |
30958779 |
T |
|
| Q |
210 |
ctcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttccacctccgttccaacatctcccaactgtctataaca |
309 |
Q |
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|| ||||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30958780 |
ctaaaaagaacagaccttgatcaaaatctttgttctcctcaatataattatacttatttgtttccacctccgttccaacatctcccaagtgtctataaca |
30958879 |
T |
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| Q |
310 |
tcactatatactacaattgt |
329 |
Q |
| |
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|||||||||||||||||||| |
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| T |
30958880 |
tcactatatactacaattgt |
30958899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 31012389 - 31012707
Alignment:
| Q |
14 |
agacatcaaaaacttctacaactgcggaagaatca---ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatca |
110 |
Q |
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|||||||||||||| |||| ||||||||| || | |||||||||||||||| ||||||||| ||||||||| || | ||||||||||| || | |
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| T |
31012389 |
agacatcaaaaactcttacagctgcggaagtattatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccg |
31012488 |
T |
|
| Q |
111 |
tttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaac |
210 |
Q |
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| ||| ||||||||||| || ||| || ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31012489 |
tatcacctttactgccacaataacaaagatactaccattttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaac |
31012588 |
T |
|
| Q |
211 |
tcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttccacctccgttccaacatctcccaactgtctataacat |
310 |
Q |
| |
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||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||| ||| |||||||| | ||||| |
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| T |
31012589 |
tcaaaagaacagaccttgatcaaaatctttgttctcctcaatataatgatacttatttgtttccacctctgtttcaatatccttcaactgtcaacaacat |
31012688 |
T |
|
| Q |
311 |
cactatatactacaattgt |
329 |
Q |
| |
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||| |||| |||||||||| |
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| T |
31012689 |
cacaatattctacaattgt |
31012707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 278
Target Start/End: Complemental strand, 15523394 - 15523165
Alignment:
| Q |
49 |
ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttactgccataacaaccaaaatactaccat |
148 |
Q |
| |
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|||||||||||||||| || |||||||||||||||| || | |||||| ||||| || | ||| | ||| ||||||| |||||| | | || ||||| |
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| T |
15523394 |
ccaacatctcttatccattttggggacaaaatcgtccttttcaatgtggggctggcaaccctttttaccttaactgccacaacaacaacaccaccaccat |
15523295 |
T |
|
| Q |
149 |
tctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcct |
248 |
Q |
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||| ||||| ||||||||||||||||||||||| || |||| || | |||| ||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
15523294 |
tctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcct |
15523195 |
T |
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| Q |
249 |
caatatgatgatacttatttgtttccacct |
278 |
Q |
| |
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||| | ||||||||||||||||||||||| |
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| T |
15523194 |
aaatttaatgatacttatttgtttccacct |
15523165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 329
Target Start/End: Original strand, 31001966 - 31002152
Alignment:
| Q |
140 |
tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc |
239 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||| |||||||| ||||| |||||||||||||| ||||||||| |
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| T |
31001966 |
tactaccattctgatatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacct---tcaaaatctt |
31002062 |
T |
|
| Q |
240 |
tgttctcctcaatatgatgatacttatttgtttccacctccgttccaacatctcccaactgtctataacatcactatatactacaattgt |
329 |
Q |
| |
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||||||||| | | || |||||||||||||||||||||| ||| ||| |||| | || |||| |||||||| |||||||| |||||| |
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| T |
31002063 |
tgttctcctaagtttgttgatacttatttgtttccacctatgtttcaatatcttcgaaatgtcataaacatcacaatatactataattgt |
31002152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 15493361 - 15493436
Alignment:
| Q |
204 |
atcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttatttgtttccacctc |
279 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||| |||||||| |
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| T |
15493361 |
atcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatacttatttgtctccacctc |
15493436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 30664093 - 30663988
Alignment:
| Q |
159 |
tcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatg |
258 |
Q |
| |
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||||||||||||| |||||| | || |||| | ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
30664093 |
tcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatg |
30663994 |
T |
|
| Q |
259 |
atactt |
264 |
Q |
| |
|
|||||| |
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|
| T |
30663993 |
atactt |
30663988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 31221752 - 31221876
Alignment:
| Q |
140 |
tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc |
239 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| || ||| | ||| |||||||||||||| || |||||||||||| |||||| | |
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|
| T |
31221752 |
tactaccattctattatcatcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttt |
31221851 |
T |
|
| Q |
240 |
tgttctcctcaatatgatgatactt |
264 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
31221852 |
tgttctcctcaatacaatgatactt |
31221876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 15493062 - 15493132
Alignment:
| Q |
14 |
agacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc |
84 |
Q |
| |
|
||||||||| |||| ||||||||| |||| ||| |||||||||||||||| ||||||||||||| ||||| |
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|
| T |
15493062 |
agacatcaagaactcctacaactgtggaaatatctccaacatctcttatccattctggggacaaagtcgtc |
15493132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 31001838 - 31001910
Alignment:
| Q |
12 |
agagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc |
84 |
Q |
| |
|
|||||||| ||||| | ||| ||||| |||| ||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
31001838 |
agagacataaaaaattcctataactgtggaaatctcaccaacatctcttatccattctggggaaaaaatcgtc |
31001910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 30943437 - 30943469
Alignment:
| Q |
125 |
ccataacaaccaaaatactaccattctgttatc |
157 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
30943437 |
ccataacaaccaaaacactaccattctgttatc |
30943469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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