View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0464_high_1 (Length: 404)

Name: NF0464_high_1
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0464_high_1
NF0464_high_1
[»] chr1 (1 HSPs)
chr1 (11-376)||(19467579-19467944)
[»] chr7 (5 HSPs)
chr7 (123-352)||(10169216-10169445)
chr7 (123-352)||(10176741-10176970)
chr7 (36-85)||(10615275-10615324)
chr7 (11-79)||(10169507-10169575)
chr7 (11-79)||(10177032-10177100)
[»] chr4 (10 HSPs)
chr4 (128-332)||(21833484-21833688)
chr4 (214-334)||(53760988-53761108)
chr4 (128-175)||(1601178-1601225)
chr4 (136-179)||(53761149-53761192)
chr4 (215-253)||(7308316-7308354)
chr4 (283-336)||(8186529-8186582)
chr4 (136-176)||(641690-641730)
chr4 (36-80)||(1601089-1601133)
chr4 (35-79)||(21833755-21833799)
chr4 (35-79)||(53761234-53761278)
[»] chr6 (3 HSPs)
chr6 (134-333)||(6588458-6588657)
chr6 (136-335)||(6416742-6416950)
chr6 (36-85)||(6588694-6588743)
[»] chr5 (5 HSPs)
chr5 (223-334)||(28532580-28532691)
chr5 (123-175)||(41900804-41900856)
chr5 (130-176)||(28532484-28532530)
chr5 (36-85)||(28532399-28532448)
chr5 (123-163)||(32268229-32268269)
[»] chr8 (4 HSPs)
chr8 (133-259)||(18314887-18315013)
chr8 (133-176)||(17627318-17627361)
chr8 (283-328)||(5766789-5766834)
chr8 (283-328)||(14003970-14004015)
[»] chr3 (4 HSPs)
chr3 (194-335)||(13469847-13469988)
chr3 (128-337)||(51763571-51763780)
chr3 (36-80)||(51763816-51763860)
chr3 (143-176)||(514011-514044)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 19467944 - 19467579
Alignment:
Q  11 cagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataaaatgcgaagaaacggacacttcagcatcttttag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  19467944 cagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataaaatgcgaagaaacagacacttcggcatcttttag 19467845  T
Q  111 attnnnnnnngcattgcaaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatg 210  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19467844 attaaaaaaagcattgcaaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatg 19467745  T
Q  211 gtaacctcttcaagaagcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtg 310  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19467744 gtaacctcttcaagaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtg 19467645  T
Q  311 caagtgaaagagcctctaccccatcacaatagttattgtaatgggtaactttatttttatttttcc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19467644 caagtgaaagagcctctaccccatcacaatagttattgtaatgggtaactttatttttatttttcc 19467579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 352
Target Start/End: Complemental strand, 10169445 - 10169216
Alignment:
Q  123 attgcaaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttca 222  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||||| |||||| ||||||    
T  10169445 attgcaaaacgataatgacttcaatgttggtctctcacgaatagcagaagcaattccagcaatagttatttgatcacactcaaacaaggtaacatcttca 10169346  T
Q  223 agaagcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 322  Q
    |||||||||||| |||| |||||||  || |  || ||||| ||||||||||| |   |||| |||||||| ||||||||||  | ||||||||||||||    
T  10169345 agaagcttacaactgttgaacaagtaaaagagtgacttgtcactcatgggaaatctacaaagtttaaccttacggagtttgactaatgcaagtgaaagag 10169246  T
Q  323 cctctaccccatcacaatagttattgtaat 352  Q
    |||||| |||||||||||||||||||||||    
T  10169245 cctctatcccatcacaatagttattgtaat 10169216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 352
Target Start/End: Complemental strand, 10176970 - 10176741
Alignment:
Q  123 attgcaaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttca 222  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||||| |||||| ||||||    
T  10176970 attgcaaaacgataatgacttcaatgttggtctctcacgaatagcagaagcaattccagcaatagttatttgatcacactcaaacaaggtaacatcttca 10176871  T
Q  223 agaagcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 322  Q
    |||||||||||| |||| |||||||  || |  || ||||| ||||||||||| |   |||| |||||||| ||||||||||  | ||||||||||||||    
T  10176870 agaagcttacaactgttgaacaagtaaaagagtgacttgtcactcatgggaaatctacaaagtttaaccttacggagtttgactaatgcaagtgaaagag 10176771  T
Q  323 cctctaccccatcacaatagttattgtaat 352  Q
    |||||| |||||||||||||||||||||||    
T  10176770 cctctatcccatcacaatagttattgtaat 10176741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 10615275 - 10615324
Alignment:
Q  36 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatgcgaag 85  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||| ||||    
T  10615275 aagacaagtcaagcccttcaaactcaccaatgagtcaataaaatgtgaag 10615324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 10169575 - 10169507
Alignment:
Q  11 cagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataaaat 79  Q
    ||||||||| |||| | | | ||| |||||||||||||||||||||||||| ||  |||||||||||||    
T  10169575 cagagatatccagagatctcaaagaaagagaagtcaaacccttcaaactcaccagcgagtcaataaaat 10169507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 10177100 - 10177032
Alignment:
Q  11 cagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataaaat 79  Q
    ||||||||| |||| | | | ||| |||||||||||||||||||||||||| ||  |||||||||||||    
T  10177100 cagagatatccagagatctcaaagaaagagaagtcaaacccttcaaactcaccagcgagtcaataaaat 10177032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 128 - 332
Target Start/End: Complemental strand, 21833688 - 21833484
Alignment:
Q  128 aaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaag 227  Q
    |||| |||||||| |||||||||||||||||||||| ||| |||||||| ||  |  |  | |||||||||||   ||||||| | ||||||||||||||    
T  21833688 aaaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaag 21833589  T
Q  228 cttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagagcctct 327  Q
    ||||||||| || | |||||||||||  ||||  | | | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |    
T  21833588 cttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagagctttt 21833489  T
Q  328 acccc 332  Q
    |||||    
T  21833488 acccc 21833484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 53761108 - 53760988
Alignment:
Q  214 acctcttcaagaagcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaa 313  Q
    ||||||| |||||| |||||||| || |||||||||||||  ||||  ||| | ||||  ||||| |||||||||||||| |||||||||| |||||       
T  53761108 acctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtgtct 53761009  T
Q  314 gtgaaagagcctctaccccat 334  Q
     ||||||||||||||||||||    
T  53761008 ctgaaagagcctctaccccat 53760988  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 1601178 - 1601225
Alignment:
Q  128 aaaacgataaagacctcaatgttggtctctcacggatagcagaagcaa 175  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  1601178 aaaaggataaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 53761192 - 53761149
Alignment:
Q  136 aaagacctcaatgttggtctctcacggatagcagaagcaattcc 179  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  53761192 aaagacgtcaatgttggtctttcacggagagcagaagcaattcc 53761149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 7308316 - 7308354
Alignment:
Q  215 cctcttcaagaagcttacaattgttaaacaagtggaaaa 253  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  7308316 cctcttccagaagcttacaattcttaaacaagtggaaaa 7308354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 8186582 - 8186529
Alignment:
Q  283 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctctaccccatca 336  Q
    |||||||||||||| ||||||| |||||| | |||||||||||| || ||||||    
T  8186582 agattaaccttgcgaagtttgaaaagtgccaatgaaagagcctcaactccatca 8186529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 641690 - 641730
Alignment:
Q  136 aaagacctcaatgttggtctctcacggatagcagaagcaat 176  Q
    ||||| ||||||||||||||||| || ||||||||||||||    
T  641690 aaagatctcaatgttggtctctcgcgtatagcagaagcaat 641730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 1601089 - 1601133
Alignment:
Q  36 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatg 80  Q
    |||| ||||||||||||||||||||| |||||||| ||| |||||    
T  1601089 aagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatg 1601133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 21833799 - 21833755
Alignment:
Q  35 taagagaagtcaaacccttcaaactcagcaatgagtcaataaaat 79  Q
    ||||| |||||||||||||||||||||  |||||| |||||||||    
T  21833799 taagacaagtcaaacccttcaaactcactaatgagccaataaaat 21833755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 53761278 - 53761234
Alignment:
Q  35 taagagaagtcaaacccttcaaactcagcaatgagtcaataaaat 79  Q
    ||||||||||||||||||||||||||| ||| || | ||||||||    
T  53761278 taagagaagtcaaacccttcaaactcaccaacgacttaataaaat 53761234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 333
Target Start/End: Complemental strand, 6588657 - 6588458
Alignment:
Q  134 ataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaagcttaca 233  Q
    |||||||| ||||| ||||||||||||||| |||||||||||| || ||| | || | || |  ||| | ||| ||| | || || |  |||||||||||    
T  6588657 ataaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacgacaaccaaatatgttgacttcctggagaagcttaca 6588558  T
Q  234 attgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagagcctctacccca 333  Q
    |||||| ||||||||||||| |||||  | | | |||||||||   ||||||||||||||||| ||||||| |||||| ||||| ||||||| |||||||    
T  6588557 attgttgaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcctgtacccca 6588458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 335
Target Start/End: Original strand, 6416742 - 6416950
Alignment:
Q  136 aaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcattt---------gatcacaccaaaacatggtaacctcttcaagaa 226  Q
    |||||||| |||| |||||||||||| | |||||||| ||||||| | |||||||||          ||||||| | ||||||| | || ||||| ||||    
T  6416742 aaagaccttaatgctggtctctcacgaagagcagaagtaattccatccatagtcattccatttaatggatcacaactaaacatgatgacttcttcgagaa 6416841  T
Q  227 gcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagagcctc 326  Q
    ||||||| ||||  || || |||||||  |||| || | | |  ||||| |  ||||||||||| ||||||||||| | |||||||||||| ||||| ||    
T  6416842 gcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgcaagtgatagagcttc 6416941  T
Q  327 taccccatc 335  Q
     ||||||||    
T  6416942 caccccatc 6416950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 6588743 - 6588694
Alignment:
Q  36 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatgcgaag 85  Q
    |||| ||||||||| ||||||||||| |||||||||||| ||||| ||||    
T  6588743 aagacaagtcaaactcttcaaactcaccaatgagtcaattaaatgtgaag 6588694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 28532580 - 28532691
Alignment:
Q  223 agaagcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 322  Q
    ||||||||||| ||| | |||||||||||||  |||| || | | |||||||||   |||||||||||||||||||||||| |||||| |||||| ||||    
T  28532580 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagag 28532679  T
Q  323 cctctaccccat 334  Q
    ||||||||||||    
T  28532680 cctctaccccat 28532691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 41900856 - 41900804
Alignment:
Q  123 attgcaaaacgataaagacctcaatgttggtctctcacggatagcagaagcaa 175  Q
    |||| |||| |||||||||||||||||||||||||  |||| |||||||||||    
T  41900856 attggaaaatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 28532484 - 28532530
Alignment:
Q  130 aacgataaagacctcaatgttggtctctcacggatagcagaagcaat 176  Q
    ||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  28532484 aacgagaaagacatcaatgtcggtctctcacggagagcagaagcaat 28532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 28532399 - 28532448
Alignment:
Q  36 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatgcgaag 85  Q
    |||| ||||||||||||| ||||||| |||||||||||||| ||| ||||    
T  28532399 aagacaagtcaaacccttgaaactcaccaatgagtcaataatatgtgaag 28532448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 32268229 - 32268269
Alignment:
Q  123 attgcaaaacgataaagacctcaatgttggtctctcacgga 163  Q
    |||| |||| |||| ||||||||||||||||||||||||||    
T  32268229 attggaaaaggatacagacctcaatgttggtctctcacgga 32268269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 18315013 - 18314887
Alignment:
Q  133 gataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaagcttac 232  Q
    |||||||||||||| |||||||||||||||| |||| ||||||| || ||  | || ||||||| |||  |||| ||| |   |||||| ||||||||||    
T  18315013 gataaagacctcaaagttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgagaagcttac 18314914  T
Q  233 aattgttaaacaagtggaaaatcgatt 259  Q
    | || || ||||||||||||| |||||    
T  18314913 agttcttgaacaagtggaaaagcgatt 18314887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 17627361 - 17627318
Alignment:
Q  133 gataaagacctcaatgttggtctctcacggatagcagaagcaat 176  Q
    |||||||||||||| | ||||||||||||||| |||||||||||    
T  17627361 gataaagacctcaaagatggtctctcacggatggcagaagcaat 17627318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 5766834 - 5766789
Alignment:
Q  283 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctcta 328  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||    
T  5766834 agattaaccttgcggagtttgatgagtgctaatgaaagagcctcta 5766789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 14003970 - 14004015
Alignment:
Q  283 agattaaccttgcggagtttgagaagtgcaagtgaaagagcctcta 328  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||    
T  14003970 agattaaccttgcggagtttgatgagtgctaatgaaagagcctcta 14004015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 335
Target Start/End: Complemental strand, 13469988 - 13469847
Alignment:
Q  194 gatcacaccaaaacatggtaacctcttcaagaagcttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaacctt 293  Q
    ||||||| | ||||||| | || ||||| ||||||||||| ||||  || ||||||||||  |||  || | | || ||||| |  ||||||||||||||    
T  13469988 gatcacaactaaacatgatgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaacctt 13469889  T
Q  294 gcggagtttgagaagtgcaagtgaaagagcctctaccccatc 335  Q
    ||||||||| | |||||||||||| ||||| || ||||||||    
T  13469888 gcggagtttaaaaagtgcaagtgatagagcttcaaccccatc 13469847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 337
Target Start/End: Complemental strand, 51763780 - 51763571
Alignment:
Q  128 aaaacgataaagacctcaatgttggtctctcacggatagcagaagcaattccagcaatagtcatttgatcacaccaaaacatggtaacctcttcaagaag 227  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  | ||| ||| | || |||||||||||   ||||||| | || ||||  |||||    
T  51763780 aaaaggataaagacgtcaatgttggtctttcacggagagcagaagtgactcctgcattggttatttgatcacagtcaaacatgatgacatcttggagaag 51763681  T
Q  228 cttacaattgttaaacaagtggaaaatcgatttgtcgctcatgggaaagccggaaagattaaccttgcggagtttgagaagtgcaagtgaaagagcctct 327  Q
    |||||| |||   |  | |||||||| |||||  | | | |||||| |||| |||| ||||||||| || ||||||| ||| ||||||||||| || | |    
T  51763680 cttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagcaagtgaaagtgcttgt 51763581  T
Q  328 accccatcac 337  Q
    | ||||||||    
T  51763580 atcccatcac 51763571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 51763860 - 51763816
Alignment:
Q  36 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatg 80  Q
    |||||||||||||||||||||||||| ||| || |||||||||||    
T  51763860 aagagaagtcaaacccttcaaactcaccaacgaatcaataaaatg 51763816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 514044 - 514011
Alignment:
Q  143 tcaatgttggtctctcacggatagcagaagcaat 176  Q
    ||||||||||||||||||||| ||||||||||||    
T  514044 tcaatgttggtctctcacggagagcagaagcaat 514011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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