View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0464_high_3 (Length: 278)
Name: NF0464_high_3
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0464_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 39 - 217
Target Start/End: Complemental strand, 40440498 - 40440320
Alignment:
| Q |
39 |
atgaatgagatttccagctaagtgaggtggcaattcagcagtgttggttatgccatttgggaactgaagtggaataatttggatggatgggttgagatta |
138 |
Q |
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| T |
40440498 |
atgaatgagatttccagctaagtgaggtggcaattcagcagtgttggttatgccatttgggaactgaagtggaataatttggatggatgggttgagatta |
40440399 |
T |
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| Q |
139 |
agagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgagaaaatagcttgttgg |
217 |
Q |
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| T |
40440398 |
agagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgagaaaatagcttgttgg |
40440320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 40443459 - 40443352
Alignment:
| Q |
101 |
actgaagtggaataatttggatggatgggttgagattaagagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttg |
200 |
Q |
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| T |
40443459 |
actgaagtgggataatgttgatggacgagttgagattaaaagctgttttgattctaggaatgtttgatgaagctgataagaaagttacgcgaactccatg |
40443360 |
T |
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| Q |
201 |
agaaaata |
208 |
Q |
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| T |
40443359 |
agagaata |
40443352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 21840169 - 21840055
Alignment:
| Q |
103 |
tgaagtggaataatttggatggatgggttgagattaagagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgag |
202 |
Q |
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| T |
21840169 |
tgaaggggaatgatatggattgaagggttgagattgaaagttgatttgatttttggaatgttagctgaaggtgacaagaatgagatgtgaattccatgag |
21840070 |
T |
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| Q |
203 |
aaaatagcttgttgg |
217 |
Q |
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| T |
21840069 |
agaataacttgttgg |
21840055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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