View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0464_low_2 (Length: 359)
Name: NF0464_low_2
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0464_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 91 - 357
Target Start/End: Complemental strand, 51827819 - 51827552
Alignment:
| Q |
91 |
gtaaattacacatcaactaatttggattgaacatttttg-gagcttttggtgaagcatgcataacataaatctggcttttttgtgactg-aaatttatca |
188 |
Q |
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| T |
51827819 |
gtaaattcaacatcaactaatttggattgaacatttttttgagcttttggtgaagcatgcataacataaatctggcttttttgtgactggaaatttatca |
51827720 |
T |
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| Q |
189 |
tgtcattttcttagtattaaaaattcttaatctagattctagttcattgtgcaaattgatttgcctcttgttatttattacttatgatattattattttc |
288 |
Q |
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| T |
51827719 |
tgtcattttcttagtattaaaaat-cttaatctagattctagttcattgtgcaaattgatttgcctcttgttatttattacttatgatattattattttc |
51827621 |
T |
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| Q |
289 |
ttatgttgtgtttgcagagttactgtctactcaccatatcaaagaatctgtcctgtctctgctcctcca |
357 |
Q |
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| T |
51827620 |
ttatgttgtgtttgcagagtttctgtctactcaccatatcaaagaatctgtcctgactctgctgctcca |
51827552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 51827878 - 51827844
Alignment:
| Q |
30 |
tattcgtgattgaaatgttgaaacaatctcaaaat |
64 |
Q |
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| T |
51827878 |
tattcgtgattgaaatgttgaaacaatctcaaaat |
51827844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 51824498 - 51824422
Alignment:
| Q |
188 |
atgtcattttcttagtattaaaaattcttaatctagattctagttcattgtgcaaattgatttgcctcttgttattta |
265 |
Q |
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| T |
51824498 |
atgtcattttcttagtaaagaaaat-cttaattttaattctagtccattgtgcaaattggttggcctcttgttattta |
51824422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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