View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0464_low_3 (Length: 314)
Name: NF0464_low_3
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0464_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 49540271 - 49540437
Alignment:
| Q |
1 |
tctttattttatctaatatctatctaatattgaaactacaaaccattgaaagtttttccttctattgcctaattattggcaaacaaaaatgaaatagatc |
100 |
Q |
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| T |
49540271 |
tctttattttatctaatatctgtctaatattgaaactacaaaccattgaaagtttttccttctattgcctaattattggcaaacaaaaatgaaatagacc |
49540370 |
T |
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| Q |
101 |
gaaacacaaagaccacgagtag--cagtgtataatgtgccagtcacacaactagagaataatctacc |
165 |
Q |
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| T |
49540371 |
gaaacacaaagaccacgagtagcacagtgtataatgtgccagtcacacaactagagaataatctacc |
49540437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 49287659 - 49287520
Alignment:
| Q |
29 |
attgaaactacaaaccattg-aaagtttttccttctattgcctaattattggcaaacaaaaatgaaatagatcgaaacacaaagaccacgagtagca--g |
125 |
Q |
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| T |
49287659 |
attgaaactacaaaccattgcaaagtttttcttacttttgtcaaattattggcaaacagaaaggaaatagatcgaaacacaaagacccgaagtaacacgg |
49287560 |
T |
|
| Q |
126 |
tgtataatgtgccagtcacacaactagagaataatctacc |
165 |
Q |
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| T |
49287559 |
tgtataatatccaagtcactcaactagggaataatctacc |
49287520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 37847428 - 37847378
Alignment:
| Q |
71 |
aattattggcaaacaaaaatgaaatagatcgaaacacaaagaccacgagta |
121 |
Q |
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| T |
37847428 |
aattattggcaaacaaaaatgaaatggatgcaaacacaaagaccacaagta |
37847378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 41186300 - 41186213
Alignment:
| Q |
25 |
taatattgaaactacaaaccattgaaagtttttccttctattgcctaattattggcaaacaaaaatgaaatagatcgaaacacaaaga |
112 |
Q |
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|||||||||||||| ||||||| ||||||||| || | | | | ||||||||||||||||||| |||||| || ||||||||||| |
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| T |
41186300 |
taatattgaaactataaaccatcaaaagttttttctacattagtcaaattattggcaaacaaaaaggaaatatgtcaaaacacaaaga |
41186213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 47874159 - 47874086
Alignment:
| Q |
23 |
tctaatattgaaactacaaaccattgaaagtttttccttctattgcctaattattggcaaacaaaaatgaaatag |
97 |
Q |
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|||||||||||||||||||||||| ||||||||||| || | | | |||| |||||||||||||| ||||||| |
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| T |
47874159 |
tctaatattgaaactacaaaccataacaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaatag |
47874086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 33548952 - 33548912
Alignment:
| Q |
254 |
cttcattcattcaatttaataaataatacatcggacaacac |
294 |
Q |
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|
| T |
33548952 |
cttcattcattcaatttaataaataatacatcggacaacac |
33548912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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