View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0464_low_4 (Length: 311)
Name: NF0464_low_4
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0464_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 90 - 300
Target Start/End: Original strand, 14574471 - 14574682
Alignment:
| Q |
90 |
agaaaggacattggttagtataaccc-gtcaagctcaaaacatgaactcaacatttcgcagaacaaatcaagtgattcttgtggagattggcattgcact |
188 |
Q |
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| T |
14574471 |
agaaaggacattggttagtataaccccgtcaagctcaaaacatgaactcaatatttcccagaacaaatcaagtgattcttgtggagattggcattgcact |
14574570 |
T |
|
| Q |
189 |
aatccacttatcatactgtccaagaagcaatgtccttttcaggaatctcatcaaataaccgttttgcatcggtcacagactcacactgcatatacatatt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14574571 |
aatccacttatcatactgtccaagaagcaatgtccttttcaggaatctcatcaaacaaccgttttgcatcggtcacagactcacactgcatatacatatc |
14574670 |
T |
|
| Q |
289 |
catctgagtatt |
300 |
Q |
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|||| ||||||| |
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| T |
14574671 |
catcagagtatt |
14574682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 101 - 292
Target Start/End: Complemental strand, 977447 - 977254
Alignment:
| Q |
101 |
tggttagtataaccc-gtcaagctcaaaacatgaactcaacatttcgcagaacaaatcaagtgattcttgtggagattggcattgcactaatccacttat |
199 |
Q |
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||||||||||||||| |||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
977447 |
tggttagtataaccccgtcaggctcaaaacctgaacccaacatttcatagaacaaatcaagtgattcttgtggacactggtattgcactaatccacttat |
977348 |
T |
|
| Q |
200 |
catact-gtccaagaagcaatgtccttttcaggaatctcatcaaataaccgttttgcatcggtcacagactcacactgcatatacatattcatc |
292 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||| || || || ||||| ||||| |||||||||| || |||||||| |||| |
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| T |
977347 |
catactagtccaagaaacaatgtccttttcaggaatctcatcaaacaatcgcttcgcatcagtcacggactcacacttcacatacatatccatc |
977254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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