View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0464_low_7 (Length: 270)

Name: NF0464_low_7
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0464_low_7
NF0464_low_7
[»] chr6 (8 HSPs)
chr6 (1-249)||(14860558-14860794)
chr6 (1-192)||(18675830-18676020)
chr6 (1-155)||(14858618-14858771)
chr6 (113-190)||(12351423-12351501)
chr6 (4-59)||(24172951-24173006)
chr6 (1-59)||(24557384-24557442)
chr6 (29-66)||(12351545-12351582)
chr6 (4-55)||(32983722-32983773)
[»] scaffold0031 (1 HSPs)
scaffold0031 (24-201)||(89948-90127)
[»] scaffold0882 (1 HSPs)
scaffold0882 (16-192)||(1068-1243)
[»] scaffold0766 (1 HSPs)
scaffold0766 (16-192)||(2160-2335)
[»] scaffold0303 (1 HSPs)
scaffold0303 (16-249)||(20363-20586)
[»] chr3 (6 HSPs)
chr3 (16-249)||(3276679-3276903)
chr3 (16-201)||(5027719-5027901)
chr3 (16-191)||(3273321-3273493)
chr3 (113-191)||(39924770-39924849)
chr3 (4-59)||(14308952-14309008)
chr3 (21-66)||(39924893-39924938)
[»] chr5 (4 HSPs)
chr5 (16-189)||(40667238-40667411)
chr5 (113-191)||(14405486-14405565)
chr5 (21-66)||(14405397-14405442)
chr5 (16-59)||(25942764-25942807)
[»] chr1 (2 HSPs)
chr1 (16-191)||(16850483-16850655)
chr1 (30-192)||(21197540-21197699)
[»] scaffold0004 (3 HSPs)
scaffold0004 (17-249)||(113567-113790)
scaffold0004 (114-191)||(354648-354726)
scaffold0004 (4-66)||(354539-354602)
[»] chr7 (8 HSPs)
chr7 (114-192)||(18070075-18070153)
chr7 (113-249)||(8595525-8595656)
chr7 (133-186)||(15889623-15889676)
chr7 (16-73)||(18069951-18070008)
chr7 (8-54)||(8826295-8826341)
chr7 (133-236)||(8826116-8826213)
chr7 (1-70)||(1907764-1907833)
chr7 (34-66)||(8595450-8595482)
[»] scaffold0047 (1 HSPs)
scaffold0047 (4-191)||(8328-8515)
[»] scaffold0097 (2 HSPs)
scaffold0097 (113-192)||(32027-32107)
scaffold0097 (1-66)||(31920-31986)
[»] chr8 (1 HSPs)
chr8 (16-190)||(39037622-39037790)
[»] chr2 (5 HSPs)
chr2 (112-191)||(26794805-26794884)
chr2 (24-91)||(2997092-2997157)
chr2 (1-66)||(20728091-20728157)
chr2 (25-65)||(24779570-24779610)
chr2 (16-66)||(4183083-4183133)
[»] chr4 (1 HSPs)
chr4 (24-91)||(17983348-17983413)
[»] scaffold1744 (1 HSPs)
scaffold1744 (1-67)||(1107-1172)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 14860794 - 14860558
Alignment:
Q  1 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  14860794 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacaaa- 14860696  T
Q  101 nnnctcaagactcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatc 200  Q
          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860695 ------aaaactcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatc 14860602  T
Q  201 ccgtatcctgtcaaagcatatattcacattctccccctttttgatgatg 249  Q
    |||||||     || ||||||||||||||||||||||||||||||||||    
T  14860601 ccgtatc-----aaggcatatattcacattctccccctttttgatgatg 14860558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18676020 - 18675830
Alignment:
Q  1 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  18676020 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaac-aaa 18675922  T
Q  101 nnnctcaagactcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaacc 192  Q
       |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  18675921 aaactcaagactcaagatttgatagcttgaatttcttttccgctttttgcatcgttgctcttctaggacttcttttgtccatcatcaaaacc 18675830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 14858771 - 14858618
Alignment:
Q  1 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  14858771 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaa-gaaa 14858673  T
Q  101 nnnctcaagactcaagacttgatagcttgaatttcttttccgctttttgcttcgt 155  Q
       ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14858672 aaactcaagactcaagacttgatagcttgaatttcttttccgctttttgcatcgt 14858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 12351501 - 12351423
Alignment:
Q  113 caagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaa 190  Q
    |||||||||| ||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  12351501 caagacttgaaagcttaaatcttcttttccgctttttgcatctttgttcttctaggacttcttttgtcaatcatcaaaa 12351423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 24173006 - 24172951
Alignment:
Q  4 atgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 59  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  24173006 atgtaaaattacttgagatgaaaattattgtgagtgtgtgatttattttaatgaga 24172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24557384 - 24557442
Alignment:
Q  1 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 59  Q
    |||||||||||||||| ||  ||||||||| ||||||||||||||||||||| ||||||    
T  24557384 ttcatgtaaaattactatatgtgaaaatcaatgtgagtgtgtgatttattttaatgaga 24557442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 12351582 - 12351545
Alignment:
Q  29 cattgtgagtgtgtgatttattttcatgagagcttttt 66  Q
    |||||||| |||||||||||||||||||||||||||||    
T  12351582 cattgtgaatgtgtgatttattttcatgagagcttttt 12351545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 32983773 - 32983722
Alignment:
Q  4 atgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcat 55  Q
    ||||||||| ||| || |||||||||| |||||||||||||||| |||||||    
T  32983773 atgtaaaatcactatatatgaaaatcaatgtgagtgtgtgatttcttttcat 32983722  T

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Target: scaffold0031 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 89948 - 90127
Alignment:
Q  24 aaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtccta---atataaacnnnnnnnctcaagactcaagactt 120  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||       ||||| |||||||||||    
T  89948 aaaaacattgtgagtgtgtgatttattttcttgagagctttttaaccacttacaataaagtcctactaatataaacaaaaaa-ctcaacactcaagactt 90046  T
Q  121 gatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcc 201  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  90047 gatagtttgaatttcttttccgctttttgcatcgttgttcttctaggacttcttttgtcaatcatcaaaaccatcgtatcc 90127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 1068 - 1243
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaa 115  Q
    |||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||       |||||||| |||    
T  1068 tttaaatgaaaaccattgtgagtgtgtgatttatttttttgagagctttttaaccacttacaataaagttctaatataaacaaaaaa-ctcaagacacaa 1166  T
Q  116 gacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaacc 192  Q
    ||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||    
T  1167 gacttgatagcttgaatttcttttccgctttttgcatcgttgctcgtctaggacttcttttgtccatcatcaaaacc 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 2335 - 2160
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaa 115  Q
    |||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||       |||||||| |||    
T  2335 tttaaatgaaaaccattgtgagtgtgtgatttatttttttgagagctttttaaccacttacaataaagttctaatataaacaaaaaa-ctcaagacacaa 2237  T
Q  116 gacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaacc 192  Q
    ||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||    
T  2236 gacttgatagcttgaatttcttttccgctttttgcatcgttgctcgtctaggacttcttttgtccatcatcaaaacc 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 20586 - 20363
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta-accacttacaataaagtcctaatataaacnnnnnnnctcaagactca 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||   || ||||||| ||||||||||||| |||         | || | |||    
T  20586 tttaaatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttggtactacttaca-taaagtcctaatacaaataaaa----ttaaaattca 20492  T
Q  115 agacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcccgtatcctgtca 213  Q
    ||||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     ||  ||||||||||||    
T  20491 agactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttcttttgtcaatcatcaaaacc-----at--cgtatcctgtca 20399  T
Q  214 aagcatatattcacattctccccctttttgatgatg 249  Q
    | ||||||||| ||||||||||||||||||||||||    
T  20398 aggcatatattgacattctccccctttttgatgatg 20363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 3276903 - 3276679
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataaagtcctaatataaacnnnnnnnctcaagactca 114  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | | |           || || ||    
T  3276903 tttaaatgaaaatcactgtgagtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataaaaat----aaaaccca 3276808  T
Q  115 agacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcccgtatcctgtcaa 214  Q
    |||||||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    ||||      |||||||||    
T  3276807 agacttgataacttgaatttcttttccgctttttgcattgttgctcttctaggacttcttttgtcaatcatcaaaactaatgtat------tcctgtcaa 3276714  T
Q  215 agcatatattcacattctccccctttttgatgatg 249  Q
     ||||||||||||||||||||||||||||||||||    
T  3276713 ggcatatattcacattctccccctttttgatgatg 3276679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 5027719 - 5027901
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta-accacttacaataaagtcctaatataaacnnnnnnnctcaagactca 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||   || ||||||| ||||||||||||| |||         | || | |||    
T  5027719 tttaaatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttggtactacttaca-taaagtcctaatacaaataaaa----ttaaaattca 5027813  T
Q  115 agacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcc 201  Q
    ||||| || ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  5027814 agactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttcttttgtcaatcatcaaaaccatcgtatcc 5027901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 3273493 - 3273321
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataaagtcctaatataaacnnnnnnnctcaagactca 114  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | | |           || || ||    
T  3273493 tttaaatgaaaatcactgtgagtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataaaaat----aaaaccca 3273398  T
Q  115 agacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
    |||||||||| |||||||||||||||| |||||||| | |||| | |||||||||||||||||||||||||||||||    
T  3273397 agacttgataacttgaatttcttttcctctttttgcattgttgcttttctaggacttcttttgtcaatcatcaaaac 3273321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 39924849 - 39924770
Alignment:
Q  113 caagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
    |||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  39924849 caagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttcttttgtcaatcatcaaaac 39924770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 14308952 - 14309008
Alignment:
Q  4 atgtaaaattac-tttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 59  Q
    ||||||||| || |||| |||| ||||||||||||||||||||||||||||||||||    
T  14308952 atgtaaaatcacatttaaatgataatcattgtgagtgtgtgatttattttcatgaga 14309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 39924938 - 39924893
Alignment:
Q  21 atgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 66  Q
    ||||||| |||||||||||||||||||||||| |||||| ||||||    
T  39924938 atgaaaaccattgtgagtgtgtgatttattttaatgagaacttttt 39924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 40667238 - 40667411
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaa 115  Q
    |||| |||||||| ||||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||        ||||||||||||    
T  40667238 tttaaatgaaaattattgtgagtgtgtgatttattttctcgagagctttttatccacttataataaagtcctaatataaataaaaaaactcaagactcaa 40667337  T
Q  116 gacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaa 189  Q
    |||||||||||||||||||||||||| |||||||| || |||||||| ||  | |||||||||| ||| |||||    
T  40667338 gacttgatagcttgaatttcttttccactttttgcatcattgttcttttaaaatttcttttgtccatcgtcaaa 40667411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 14405486 - 14405565
Alignment:
Q  113 caagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
    |||||||||| ||||||||| |||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||    
T  14405486 caagacttgaaagcttgaatcttcttttccgctttttgtatctttgttcttctaggatttcttttgtcaatcatcaaaac 14405565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 14405397 - 14405442
Alignment:
Q  21 atgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 66  Q
    ||||||| |||||||||||||||||||||||| |||||| ||||||    
T  14405397 atgaaaaccattgtgagtgtgtgatttattttaatgagaacttttt 14405442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 25942807 - 25942764
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 59  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  25942807 tttatatgaaaatcattatgggtgtgtgatttattttcatgaga 25942764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 16850655 - 16850483
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataaagtcctaatataaacnnnnnnnctcaagactca 114  Q
    |||| |||||||||| || |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| | | |           || || ||    
T  16850655 tttaaatgaaaatcactgggagtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataaaaat----aaaaccca 16850560  T
Q  115 agacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
    |||||||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||    
T  16850559 agacttgataacttgaatttcttttccgctttttgcattgttgctcttctaggacttcttttgtcaatcatcaaaac 16850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 21197699 - 21197540
Alignment:
Q  30 attgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttg 129  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||           || |  ||||||  || ||||||    
T  21197699 attgtgagtgtgtgatttattttcttgagagatttttaaccacttacaataaattcgtaatataaataaaaat----aaaatccaagacaagaaagcttg 21197604  T
Q  130 aat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaacc 192  Q
    ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21197603 aatattcttttccgctttttgcatctttgttcttctaggacttcttttgtcaatcatcaaaacc 21197540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 113567 - 113790
Alignment:
Q  17 ttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta-accacttacaataaagtcctaatataaacnnnnnnnctcaagactcaa 115  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||  || ||||||| |||||||||||||||||           || |  |||    
T  113567 ttagatgaaaattattgtgactgcgtgatttattttcatgagagctttttctactacttaca-taaagtcctaatataaataaaaat----aaaatccaa 113661  T
Q  116 gacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcccgtatcctgtcaa 214  Q
    |||| || ||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||    || |      |||||||||    
T  113662 gactagaaagcttgaatcttcttttccgctttttgcatcgctgttcttctaggacttcatttgtcaattatcaaaactaaagtgt------tcctgtcaa 113755  T
Q  215 agcatatattcacattctccccctttttgatgatg 249  Q
     ||||||||||||||||||||||||||||||||||    
T  113756 ggcatatattcacattctccccctttttgatgatg 113790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 354648 - 354726
Alignment:
Q  114 aagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
    ||||||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  354648 aagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttcttttgtcaatcatcaaaac 354726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 354539 - 354602
Alignment:
Q  4 atgtaaaattactttagatgaaaatcattgtgagtgtgtgattta-ttttcatgagagcttttt 66  Q
    ||||||||| |||||| ||||||| ||||||||||||||||| || |||| | |||||||||||    
T  354539 atgtaaaatcactttatatgaaaaacattgtgagtgtgtgatatatttttaacgagagcttttt 354602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 18070075 - 18070153
Alignment:
Q  114 aagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaacc 192  Q
    |||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||    
T  18070075 aagacttgatagcttgaatttcttttccgccttttacatctttgttcttctaggacttcttttgtcaatcatcaaaacc 18070153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 8595525 - 8595656
Alignment:
Q  113 caagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcccgtatcctgt 211  Q
    ||||||||||  |||||||| |||||||||||||||||| |  ||| ||||||||||||||||||||||||||||||||||    |||      || |||    
T  8595525 caagacttgaaggcttgaatcttcttttccgctttttgcatttttgatcttctaggacttcttttgtcaatcatcaaaaccattctat------tcatgt 8595618  T
Q  212 caaagcatatattcacattctccccctttttgatgatg 249  Q
    ||| ||| ||||||||||||||| ||||||||||||||    
T  8595619 caaggcagatattcacattctccacctttttgatgatg 8595656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 15889676 - 15889623
Alignment:
Q  133 ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 186  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||||||||    
T  15889676 ttcttttccgctttttgcatctttgttcatctaggacttcttttgtcaatcatc 15889623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 18069951 - 18070008
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccact 73  Q
    |||| |||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  18069951 tttatatgaaaaatattgtgagtatgtgatttattttcatgagagctttttaaccact 18070008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 8826341 - 8826295
Alignment:
Q  8 aaaattactttagatgaaaatcattgtgagtgtgtgatttattttca 54  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  8826341 aaaattactttatatgaaaatcattgtgacggtgtgatttattttca 8826295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 8826213 - 8826116
Alignment:
Q  133 ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaaccgccgtatcccgtatcctgtcaaagcatatattcacattct 232  Q
    ||||||||  |||||||| |  || ||||||||| |||||||||||||||||||||||||   ||||      ||||||||| ||||||||||||||||     
T  8826213 ttcttttctactttttgcattatttttcttctagcacttcttttgtcaatcatcaaaaccaatgtat------tcctgtcaaggcatatattcacattcc 8826120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1907833 - 1907764
Alignment:
Q  1 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaacc 70  Q
    ||||| |||||| ||| || ||||||||| | |||| ||||||| |||||||||||||||  ||||||||    
T  1907833 ttcatttaaaatcactgtacatgaaaatcttcgtgaatgtgtgacttattttcatgagagtcttttaacc 1907764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 8595450 - 8595482
Alignment:
Q  34 tgagtgtgtgatttattttcatgagagcttttt 66  Q
    ||||||||||||||||||| |||||||||||||    
T  8595450 tgagtgtgtgatttattttaatgagagcttttt 8595482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 8515 - 8328
Alignment:
Q  4 atgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttca-tgagagcttttta-accacttacaataaagtcctaatataaacnnnnn 101  Q
    ||||||||| |||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||  || |||||||  |||||||||| | |||          
T  8515 atgtaaaatcactttatatgaaaaacattgtgagtgtgtgatatatttttaatgagagctttttctactacttacataaaagtcctaaaacaaataaaaa 8416  T
Q  102 nnctcaagactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
       | || |  |||||||||| ||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||    
T  8415 ---ttaaaatccaagacttgaaagcttgaatcttcttttcggctttttgcatctttgttcttctaggacttcttttgtcaatcatcaaaac 8328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 32027 - 32107
Alignment:
Q  113 caagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaacc 192  Q
    ||||||| || ||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||    
T  32027 caagactagaaagcttgaatattcttttccgctttatgcatcgttgttcttctaggacttcatttgtcaatcatcaaaacc 32107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31920 - 31986
Alignment:
Q  1 ttcatgtaaaattacttt-agatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 66  Q
    |||||| ||||||||||| | || ||||||| |||||||||||||| ||||||||||||||||||||    
T  31920 ttcatgcaaaattacttttaaataaaaatcaatgtgagtgtgtgatgtattttcatgagagcttttt 31986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 39037790 - 39037622
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagct---ttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagact 112  Q
    |||| |||||||||||||||||||| |||||||||||| ||||||||   ||||||||||||| ||||||||||||| | | |           || |      
T  39037790 tttaaatgaaaatcattgtgagtgtatgatttattttcttgagagcttttttttaaccacttaaaataaagtcctaacacataaaaat------aaaatc 39037697  T
Q  113 caagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaa 190  Q
    |||||||||||| ||||||||||||||||||||||||   | ||| ||||||| ||||| ||||||||||||||||||    
T  39037696 caagacttgataacttgaatttcttttccgctttttg---cattgctcttctaagacttattttgtcaatcatcaaaa 39037622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 26794884 - 26794805
Alignment:
Q  112 tcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatcaaaac 191  Q
    |||||||| | ||||||||||||||||| |||||  ||| |||||||||||||| |||||||||||||||| || |||||    
T  26794884 tcaagactcggtagcttgaatttctttttcgcttactgcatcgttgttcttctaagacttcttttgtcaattattaaaac 26794805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 2997092 - 2997157
Alignment:
Q  24 aaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaata 91  Q
    |||| |||||| |||||||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  2997092 aaaaacattgttagtgtgtgatttattttcatgagag--ttttaaccacttacaacaatgtcctaata 2997157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20728091 - 20728157
Alignment:
Q  1 ttcatgtaaaattacttt-agatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 66  Q
    |||||| ||||||||||| | || ||||||| |||||||||||||| ||||||||||||||||||||    
T  20728091 ttcatgcaaaattacttttaaataaaaatcaatgtgagtgtgtgatgtattttcatgagagcttttt 20728157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 24779610 - 24779570
Alignment:
Q  25 aaatcattgtgagtgtgtgatttattttcatgagagctttt 65  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  24779610 aaatcattgcgagtgtgtgatttattttcatgagagctttt 24779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 4183083 - 4183133
Alignment:
Q  16 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 66  Q
    |||| |||||||| ||||||| ||||||||||||||| | |||||||||||    
T  4183083 tttaaatgaaaattattgtgaatgtgtgatttatttttaagagagcttttt 4183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 17983348 - 17983413
Alignment:
Q  24 aaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaata 91  Q
    |||| |||||| |||||||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  17983348 aaaaacattgttagtgtgtgatttattttcatgagag--ttttaaccacttacaacaatgtcctaata 17983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1744 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1107 - 1172
Alignment:
Q  1 ttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 67  Q
    |||||||||||| ||||| ||  || || ||||||||||||||||||||||| ||||||||||||||    
T  1107 ttcatgtaaaatcactttcgaaaaagat-attgtgagtgtgtgatttattttaatgagagcttttta 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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