View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0464_low_8 (Length: 270)
Name: NF0464_low_8
Description: NF0464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0464_low_8 |
 | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 14860770 - 14861011
Alignment:
| Q |
1 |
ttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14860770 |
ttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgag |
14860869 |
T |
|
| Q |
101 |
cttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14860870 |
cttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcct |
14860969 |
T |
|
| Q |
201 |
aattatttcaatgctatattctgcattcatgatattttcttt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14860970 |
aattatttcaatgctatattctgcattcatgatattttcttt |
14861011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 14858747 - 14858965
Alignment:
| Q |
1 |
ttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14858747 |
ttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattgattttgacattgaaaatatatttgag |
14858846 |
T |
|
| Q |
101 |
cttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14858847 |
cttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcct |
14858946 |
T |
|
| Q |
201 |
aattatttcaatgctatat |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14858947 |
aattatttcaatgctatat |
14858965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 18676864 - 18677081
Alignment:
| Q |
25 |
aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18676864 |
aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatattaatcatttcgtaaat |
18676963 |
T |
|
| Q |
125 |
caaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgc |
224 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18676964 |
caaaatatcatggctttgacttttgcatgcaaatattttcattacataattgattatgtgattttcaaattggcctaattatttcaatgctatattctgc |
18677063 |
T |
|
| Q |
225 |
attcatgatattttcttt |
242 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18677064 |
attcatgatattttcttt |
18677081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18675996 - 18676028
Alignment:
| Q |
1 |
ttcatctaaagtaattttacatgaaaatatttt |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18675996 |
ttcatctaaagtaattttacatgaaaatatttt |
18676028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 39924948 - 39925176
Alignment:
| Q |
14 |
attttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatc |
113 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39924948 |
attttacataaaattatttttacataaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgattttaatt |
39925047 |
T |
|
| Q |
114 |
atttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatg |
213 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39925048 |
attacgtaaatcaaattatcatggctttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatg |
39925147 |
T |
|
| Q |
214 |
ctatattctgcattcatgatattttcttt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39925148 |
ctatattctgcattcatgatattttcttt |
39925176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 5027714 - 5027635
Alignment:
| Q |
14 |
attttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
5027714 |
attttgcattaaaatatttttacatgaaaacttataatttattttacaaattgcataattctttttgacattaaaaatat |
5027635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 3273516 - 3273579
Alignment:
| Q |
30 |
tttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
||||||||||| ||| || |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3273516 |
tttttacatgagaagccaaaatttattttgaaaattgcataattggttttgacattaaaaatat |
3273579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 3276926 - 3276989
Alignment:
| Q |
30 |
tttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
||||||||||| ||| || |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3276926 |
tttttacatgagaagccaaaatttattttgaaaattgcataattggttttgacattaaaaatat |
3276989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 14405387 - 14405159
Alignment:
| Q |
14 |
attttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatc |
113 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14405387 |
attttacataaaattatttttacataaaaagtcataatttattttacaaattgtataattggttttgacattgaaaatatatttgagcttgattttaatt |
14405288 |
T |
|
| Q |
114 |
atttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatg |
213 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14405287 |
attacgtaaatcaaattatcatggctttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatg |
14405188 |
T |
|
| Q |
214 |
ctatattctgcattcatgatattttcttt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14405187 |
ctatattctgcattcatgatattttcttt |
14405159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 40667233 - 40667153
Alignment:
| Q |
14 |
attttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatata |
94 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
40667233 |
attttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataattgattttgacattaaaaatata |
40667153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 1063 - 893
Alignment:
| Q |
14 |
attttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatc |
113 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | ||| |
|
|
| T |
1063 |
attttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataattggttttgacattaaaaatttatttgtgcatgatttgaatt |
964 |
T |
|
| Q |
114 |
atttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaa |
193 |
Q |
| |
|
|| |||||||| ||||| ||| ||||||||||| |||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
963 |
at--------tcaaattaccatggctttaacttttgcata-taatattttcattacatgattgattacgtggttctcaaa |
893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 2340 - 2510
Alignment:
| Q |
14 |
attttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatc |
113 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | ||| |
|
|
| T |
2340 |
attttgcataaaaatatttttacataaaaagtcagaatttattttacaaattgcataattggttttgacattaaaaatttatttgtgcatgatttgaatt |
2439 |
T |
|
| Q |
114 |
atttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaa |
193 |
Q |
| |
|
|| |||||||| ||||| ||| ||||||||||| |||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
2440 |
at--------tcaaattaccatggctttaacttttgcata-taatattttcattacatgattgattacgtggttctcaaa |
2510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 89939 - 89769
Alignment:
| Q |
9 |
aagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||| |||||||||| |||||||||||||| ||| | |
|
|
| T |
89939 |
aagtgattttacatgaaaatatttttgcatgaaaggtcataatttatttccaaaactgcataattgattttgacattaaaaatatatttgagtaagattt |
89840 |
T |
|
| Q |
109 |
taatcatttcgtaaatcaaattatcatggttttgac-ttttgcatacaaatattttcattacataattgatt |
179 |
Q |
| |
|
|| ||| |||||||||| | ||||| |||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
89839 |
ggatttattcataaatcaaatgaccatggatttgactttttgcata-aaatattttcattacataattgatt |
89769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 20601 - 20670
Alignment:
| Q |
24 |
aaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
20601 |
aaaatatttttacatgaaaaattataatttattttacaaattgcataattctttttgacattaaaaatat |
20670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 24779619 - 24779680
Alignment:
| Q |
32 |
tttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
24779619 |
tttacatgaaaatttataatttattttacaaattgcataattatttttgacattaaaaatat |
24779680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 20728108 - 20728018
Alignment:
| Q |
8 |
aaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttga |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| | |||| |||||| |||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
20728108 |
aaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgattttagaaattgtataatt-gttttgacattaaaaatatatttga |
20728018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 31937 - 31847
Alignment:
| Q |
8 |
aaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttga |
99 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| | |||| |||||| |||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
31937 |
aaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgattttagaaattgtataatt-gttttgacattaaaaatatatttga |
31847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 16850678 - 16850741
Alignment:
| Q |
30 |
tttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
||||||||||| ||| || |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
16850678 |
tttttacatgagaagccaaaatttattttgaaaattgcataattggttttgacattaaaaatat |
16850741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8494 - 8566
Alignment:
| Q |
1 |
ttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataatt |
73 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||| ||||||||| ||||||| ||| | ||||||||||||| |
|
|
| T |
8494 |
ttcatataaagtgattttacataaaaatatttttgcatgaaaagccataattaattatgtaaattgcataatt |
8566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 39037813 - 39037876
Alignment:
| Q |
30 |
tttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
93 |
Q |
| |
|
||||||||||| ||| || |||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
39037813 |
tttttacatgagaagccaaaatttattttgaaaatggcataattggttttgacattaaaaatat |
39037876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 8595435 - 8595388
Alignment:
| Q |
8 |
aaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt |
56 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8595435 |
aaagtgattttgcatgaaaatattttt-catgaaaagccataatttatt |
8595388 |
T |
|
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