View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0465_high_1 (Length: 435)
Name: NF0465_high_1
Description: NF0465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0465_high_1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 32083670 - 32084089
Alignment:
| Q |
16 |
acatcatcaactgcaacctcttccttataacaatcccaccaatactcgcttcggcgttgttcttaacatcgttaacaacactctcagcttcagactccca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083670 |
acatcatcaactgcaacctcttccttataacaatcccaccaatacttgcttcggcgttgttcttaacatcgttaacaacactctcagcttcagactccca |
32083769 |
T |
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| Q |
116 |
cccgtaacgatactgttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatg |
215 |
Q |
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| T |
32083770 |
cccgtaacgatactgttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatg |
32083869 |
T |
|
| Q |
216 |
tcttgtcctttacctgtgaagatatcgaaaactacgttacgtgtacgtgatccgaattcaacaccttgtgtgtggaggacttctttggcgagttctgggg |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083870 |
tcttgtcctttaccagtgaagatatcgaaaactacgttacgtgtacgtgatccgaattcaacaccttgtgtgtggaggacttctttggcgagttctgggg |
32083969 |
T |
|
| Q |
316 |
aagaaactaccacgaggttacgttggcccatacgtaggaggaacatttcgccgaagcgtttggcgtaatcggtgaggttccggcggttgagatcatctcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
32083970 |
aagaaactaccacgaggttacgttggcccatacgtaggaggaacatttcgccgaagcgtttggcgtaatcggtgaggttacggtggttgagatcatctcc |
32084069 |
T |
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| Q |
416 |
gacttgaagccagttaccga |
435 |
Q |
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| T |
32084070 |
gacttgaagccagttaccga |
32084089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 285
Target Start/End: Complemental strand, 50240541 - 50240387
Alignment:
| Q |
131 |
ttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttacct |
230 |
Q |
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||||||||| ||||| || ||||| || | |||||||||||| |||||||| |||||||| || || ||||| ||||| |||||||||||||| ||||| |
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| T |
50240541 |
ttgaacaactttgttagtgaaaaatggcaatgtcatgattcttcgcattttgcgccaatgatcaccatagacagtgaaaaccatgtcttgtccattacca |
50240442 |
T |
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| Q |
231 |
gtgaagatatcgaaaactacgttacgtgtacgtgatccgaattcaacaccttgtg |
285 |
Q |
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|||||||| || || || |||||||| | ||| || || || || |||||||||| |
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| T |
50240441 |
gtgaagatgtcaaagacaacgttacgaggacgagaaccaaactcgacaccttgtg |
50240387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 16117813 - 16117752
Alignment:
| Q |
374 |
tttggcgtaatcggtgaggttccggcggttgagatcatctccgacttgaagccagttaccga |
435 |
Q |
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||||||||||| |||||| || ||| |||||||||||||||||||||||||| ||||||||| |
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| T |
16117813 |
tttggcgtaattggtgagattacggtggttgagatcatctccgacttgaagcaagttaccga |
16117752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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