View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0466_high_3 (Length: 246)
Name: NF0466_high_3
Description: NF0466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0466_high_3 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 48306616 - 48306397
Alignment:
| Q |
27 |
ttaacagtctattttaactagtagcctcaagactaaacttgtatagaaattaacggaaaagtaataaaaacaaattcactttttctcttcttgatttctt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48306616 |
ttaacagtctattttaactagtagcctcaagactaaacttgtatagaaattaacggaaaagtaataaaaacaaattcactttttctcttcttgatttctt |
48306517 |
T |
|
| Q |
127 |
catcccactacattataaatgtttgaaagaaaaaaggtagaatcaccaacttacaaacacaattaagtatagaagaacatggctactggagcatctcata |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48306516 |
catcccactacattataaatgtttgaaagaaaaaaggtagaatcaccaacttacaaacacaattaagtatagaagaacatggccactggagcatctcata |
48306417 |
T |
|
| Q |
227 |
tgatgcttagttgtgtcttt |
246 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
48306416 |
tgatgcttaggtgtgtcttt |
48306397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 48295743 - 48295524
Alignment:
| Q |
27 |
ttaacagtctattttaactagtagcctcaagactaaacttgtatagaaattaacggaaaagtaataaaaacaaattcactttttctcttcttgatttctt |
126 |
Q |
| |
|
|||||| || |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48295743 |
ttaacactccattttagctggaagcctcaagactaaacttgtatagaaattaacggaaaagtaataaaaacaaattcaccttttctcttcttgatttctt |
48295644 |
T |
|
| Q |
127 |
catcccactacattataaatgtttgaaagaaaaaaggtagaatcaccaacttacaaacacaattaagtatagaagaacatggctactggagcatctcata |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48295643 |
catcccactacattataaatgtttgaaagaaaaaaggtagaatcaccaacttacaaacacaattaagtatagaagaacatggccactggagcatctcata |
48295544 |
T |
|
| Q |
227 |
tgatgcttagttgtgtcttt |
246 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
48295543 |
tgatgcttaggtgtgtcttt |
48295524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 535 times since January 2019
Visitors: 3481