View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0466_low_4 (Length: 290)
Name: NF0466_low_4
Description: NF0466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0466_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 38883970 - 38883813
Alignment:
| Q |
1 |
gcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccatacc |
100 |
Q |
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| T |
38883970 |
gcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccatacc |
38883871 |
T |
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| Q |
101 |
agctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcattt |
158 |
Q |
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| T |
38883870 |
agctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcattt |
38883813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 38893154 - 38893005
Alignment:
| Q |
9 |
gcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatga |
108 |
Q |
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| T |
38893154 |
gcaccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatga |
38893055 |
T |
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| Q |
109 |
tgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcattt |
158 |
Q |
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| T |
38893054 |
tgattgctgtgaagtgataccattgcgttttcgccacatcaagtgcattt |
38893005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 30620922 - 30621073
Alignment:
| Q |
7 |
cagcaccatcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctat |
106 |
Q |
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| T |
30620922 |
cagctccatcgacatggtagtaaatgcgaccgagtagctttgtgacaagggatatgcagaatagatcgtatgcatcggtgaagaagcccattccagctat |
30621021 |
T |
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| Q |
107 |
gatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcattt |
158 |
Q |
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| T |
30621022 |
gacaattgctgtgaaatggtaccattgtgttttcgctacatctagtgcattt |
30621073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 16175440 - 16175557
Alignment:
| Q |
41 |
caactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgtttta |
140 |
Q |
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| T |
16175440 |
caactttgtaacaagagaaatgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtcttt |
16175539 |
T |
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| Q |
141 |
gccacatcaagcgcattt |
158 |
Q |
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| T |
16175540 |
gccacatctagtgcattt |
16175557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 16223312 - 16223195
Alignment:
| Q |
41 |
caactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgtttta |
140 |
Q |
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| T |
16223312 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttg |
16223213 |
T |
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| Q |
141 |
gccacatcaagcgcattt |
158 |
Q |
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| T |
16223212 |
gccacatcaagtgcattt |
16223195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 16183922 - 16183830
Alignment:
| Q |
41 |
caactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattg |
133 |
Q |
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| T |
16183922 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagctatcacaattgtagtgaaatggtacaattg |
16183830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 33115062 - 33114944
Alignment:
| Q |
39 |
agcaactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttt |
138 |
Q |
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| T |
33115062 |
agcaatttggtaacaagggaaatgcagaagagatcataggaatcagtgaaaaaacccattccagcaatgacaattgcagtaaaatgataccactgtgtct |
33114963 |
T |
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| Q |
139 |
tagccacatcaagcgcatt |
157 |
Q |
| |
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| T |
33114962 |
tggctacatcaagtgcatt |
33114944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 9700038 - 9700111
Alignment:
| Q |
63 |
cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgt |
136 |
Q |
| |
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|||||||||||||||||||| || ||||||||||| ||||| || | || || || | ||||||||||||||| |
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| T |
9700038 |
cagaacagatcataggcatcagtgaagaatcccatgccagcaattactatagctgttacatggtaccattgtgt |
9700111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 37316177 - 37316253
Alignment:
| Q |
63 |
cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgtttt |
139 |
Q |
| |
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| T |
37316177 |
cagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgtttt |
37316253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 19207113 - 19207037
Alignment:
| Q |
63 |
cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgtttt |
139 |
Q |
| |
|
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|
| T |
19207113 |
cagaaaaggtcatatgcatctgtgcagaatcccataccagcaattatgatggctgtgaaaaggtaccattgtgtttt |
19207037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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