View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0467-Insertion-1 (Length: 1101)
Name: NF0467-Insertion-1
Description: NF0467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0467-Insertion-1 |
 | |
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| [»] scaffold2079 (2 HSPs) |
| | |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 996 - 443
Alignment:
| Q |
8 |
gtgaagctgcaccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
996 |
gtgaagctgcaccaaagctaggtagtaaagaaaaatggcaaaaaccaaagccatca---gtagagattttcggttgcttgtattcattgctgcaaacccg |
900 |
T |
|
| Q |
108 |
acgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaagaaacagagta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
899 |
acgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaagaaacagagta |
800 |
T |
|
| Q |
208 |
agttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattctgccat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
799 |
agttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattctgccat |
700 |
T |
|
| Q |
308 |
tgttcttcagactaaacttttg---atgagtacaacacatgcttcaatattgcttt--tagagttgaggtttggaaaaagagctatgaagaaaaaacatg |
402 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
699 |
tgttcttcaaactcaacttttgatgatgagtacaacacattcttcaatattgcttttatagagtcgaggtttggaaaaagagctatgaagaaaaaacatg |
600 |
T |
|
| Q |
403 |
gaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttacactatactcgattgaactttcttgtccaac |
502 |
Q |
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| T |
599 |
gaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactatactcgattgaactttcttgtccaac |
500 |
T |
|
| Q |
503 |
gaacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
559 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499 |
gagcaaaaacaattgaacctgtcccaccaaatagattccatttattccttcattttt |
443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 869 - 1028
Target Start/End: Complemental strand, 396 - 228
Alignment:
| Q |
869 |
ccaacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgag-aaaattctacccgatt |
967 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
396 |
ccaacttgtgcatttgagcatagtcgcataatttgcaattcatgttggtcacctatgggcggattcggggtacgcaatatgagaaaaattctacccgatt |
297 |
T |
|
| Q |
968 |
-agtatagta-gctatct--atattgc-aaaaagtagtgtctgcgt---caaatattcttttatattca |
1028 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
296 |
aagtatagtaggctatcttaatattgcaaaaaagtagtgcctgcgttccaaaatattcttttatattca |
228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 6242765 - 6242409
Alignment:
| Q |
16 |
gcaccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgc |
115 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242765 |
gcaccaaagctaggtagtaaagaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgc |
6242666 |
T |
|
| Q |
116 |
aaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaagaaacagagtaagttaatg |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| || | |||| |
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| T |
6242665 |
aaacaatagcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaatgaa--------ttcaagaaa-----aaattaaatg |
6242579 |
T |
|
| Q |
216 |
tttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatg------aagttgaagttgcatttggaattgtagctcctaattctgccattg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
6242578 |
tttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgccgttg |
6242479 |
T |
|
| Q |
310 |
ttcttcagactaaacttttgatgagtacaacacatgcttcaatattgcttt--tagagttgaggtttgga |
377 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
6242478 |
ttcttcaaacttaacttttgataagtacaacacattcttcaatattgcttttatagagttgaggtttgga |
6242409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 229 - 463
Target Start/End: Original strand, 6333713 - 6333961
Alignment:
| Q |
229 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaattctgccattgttcttcagactaa |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
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|
| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
|
| Q |
323 |
acttttgatgagtacaacacatgcttcaatattgctttt--------agagttgaggtttggaaaaagagctatgaagaaaaaacatggaaaaggagcta |
414 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |||||| ||| || |
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| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatatgaagaaaaaacagggaaaaagaggta |
6333912 |
T |
|
| Q |
415 |
tgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaat |
463 |
Q |
| |
|
||| |||||||| |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6333913 |
tgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaat |
6333961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 197 - 361
Target Start/End: Original strand, 6326201 - 6326368
Alignment:
| Q |
197 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgta |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |
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|
| T |
6326201 |
gaaacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgta |
6326300 |
T |
|
| Q |
291 |
gctcctaattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattgctttt |
361 |
Q |
| |
|
||| ||||||| |||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
6326301 |
gcttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgctttt |
6326368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 408 - 559
Target Start/End: Complemental strand, 6242411 - 6242256
Alignment:
| Q |
408 |
ggagctatgaaacaatttgcatgagacagtgaccca-taaaaacgtttaatacgaattcgttttacactata---ctcgattgaactttcttgtccaacg |
503 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
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|
| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttcttgtccaacg |
6242312 |
T |
|
| Q |
504 |
aacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
559 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6242311 |
agcaaagaaaattgaacctgtcccaccaaatagattccatttattccttcattttt |
6242256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 6325984 - 6326094
Alignment:
| Q |
70 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctaga |
169 |
Q |
| |
|
|||| ||||| || ||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||||||| |
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|
| T |
6325984 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctaga |
6326083 |
T |
|
| Q |
170 |
aagggttgaat |
180 |
Q |
| |
|
|| |||||||| |
|
|
| T |
6326084 |
aatggttgaat |
6326094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 6333461 - 6333571
Alignment:
| Q |
70 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctaga |
169 |
Q |
| |
|
|||| ||||| || ||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
6333461 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctaga |
6333560 |
T |
|
| Q |
170 |
aagggttgaat |
180 |
Q |
| |
|
|| |||||||| |
|
|
| T |
6333561 |
aatggttgaat |
6333571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 870 - 954
Target Start/End: Complemental strand, 6242208 - 6242124
Alignment:
| Q |
870 |
caacttgtgcatttgaggatagtcccataatttgcaatttatgttggtcacctatgggcggattcggggtacgcaatatgagaaa |
954 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
6242208 |
caacttgttcatttgagcatagtcacataatttgcaattcatgttgatcacgtatggacggattcgcggtacgcaatatgagaaa |
6242124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 6346541 - 6346677
Alignment:
| Q |
48 |
aaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataatt |
147 |
Q |
| |
|
|||||||||||||||| ||| | |||||| || | ||||||||| ||| ||||||||| | ||||| |||||| ||| |||||||||| |||| || |
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|
| T |
6346541 |
aaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagtt |
6346640 |
T |
|
| Q |
148 |
ctccaacttcattcaatctagaaagggttgaataaat |
184 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6346641 |
ttccaacttcattcaagctagaaagggttgaataaat |
6346677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 6220993 - 6220934
Alignment:
| Q |
297 |
aattctgccattgttcttcagactaaacttttgatgagtacaacacatgcttcaatattg |
356 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6220993 |
aattctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattg |
6220934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 563 - 640
Target Start/End: Original strand, 36807230 - 36807309
Alignment:
| Q |
563 |
aggagatagagcgtgagac--aggtttgcaaaactgaatatcctttattaaagcaaaatggctaatatatagcctttaca |
640 |
Q |
| |
|
|||||||||| ||||| || |||||||| |||||| ||| ||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
36807230 |
aggagatagatcgtgacactcaggtttgcgaaactgggtattctttattaaagcaaagtggctaatatataacatttaca |
36807309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 435 - 476
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
435 |
agtgacccataaaaacgtttaatacgaattcgttttacacta |
476 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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