View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0467-Insertion-2 (Length: 1101)
Name: NF0467-Insertion-2
Description: NF0467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0467-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 156 - 706
Target Start/End: Complemental strand, 4051494 - 4050943
Alignment:
| Q |
156 |
aaaagatgcatatagatctctttaagtaattgcaaaacaaaaacaatcactttaattcaaaactttgatttgcattagtctaatttgttaaaattttaac |
255 |
Q |
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| T |
4051494 |
aaaagatgcatatagatctctttaagtaattgcaaaacaaaaacaatcactttaatccaaaactttgatttgcattagtctaatttgttaaaattttaac |
4051395 |
T |
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| Q |
256 |
aggtagacgtagacattgatattgatacctctccatcattccctattacagaagaaatgagaatgaaagcacagtatttaaggttttgtgatccctctct |
355 |
Q |
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| T |
4051394 |
aggtagatgtagacattgatattgatacctctccatcattccctattacagaagaaatgagaatgaaagcacagtatttaaggttttgtgatccctctct |
4051295 |
T |
|
| Q |
356 |
ctactatcatagagattgttacatannnnnnn-cttttggttgtctatgcagcaccgacactacactagcacttattaattacatataatcacttcaatt |
454 |
Q |
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| T |
4051294 |
ctactatcagagagattgttacatattttttttcttttggttgtctatgcagcaccaacactacactagcatttgttaattacatataatcacttcaatt |
4051195 |
T |
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| Q |
455 |
ttttcaagttattatcggtgtttacatgtccgtgtttatgtcatgtccggttcttagaatttggcattggtctaacccaacccctataaaactggcttgt |
554 |
Q |
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| T |
4051194 |
ttttcaagttattatcggtgtttacatgtccgtgtttatgtcgtgtccggttcttagaatttggcattggtctaacccaacccctataaaaccggcttgt |
4051095 |
T |
|
| Q |
555 |
agagtgacaatattgtctccacttataaaattatattcaaaccttagttcattcattgtgggactctcaacggtctgtgtctatattggtatttcatact |
654 |
Q |
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| T |
4051094 |
agagtgacaatattgtctctacttataaaattatattcaaaccttagctcattcattttgggactcttgacggtctgtgtctatattggtatttcatact |
4050995 |
T |
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| Q |
655 |
tttccgtattatctataatatttaagtgttgcagggaacaaatgcgcgagag |
706 |
Q |
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| T |
4050994 |
tttccgtattctctataatatttaagtgttgcagggaacaaatgcgcgagag |
4050943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 750 - 1056
Target Start/End: Complemental strand, 4050899 - 4050590
Alignment:
| Q |
750 |
gtaccttaattttattaacttcttcacacattatttacaactacttatctcttattgtttctttctcctccctatatttgcttcatcacattatactgtg |
849 |
Q |
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| T |
4050899 |
gtaccttaattttattaacttcttcacacattatttacaactacttatctcttattgtttctttctcctccctatatttgcttcatcacattatactgtg |
4050800 |
T |
|
| Q |
850 |
attgtgttagaaagaaattacaaatatgataaa-aaatgcaaatgaaacggatgaatttaccaaagtcttaggtattcatcataggtatatggtaggaac |
948 |
Q |
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| T |
4050799 |
attgtgttagaaagaaattacaaatatgataaacaaatgcaaatgaaacggatgaatttaccaaagtcttaggtattcatcataggtatatggtaggaac |
4050700 |
T |
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| Q |
949 |
taacttttactaataaaacaatgaagactacttctatagcattttgtttgttccatcatc-tctaatagttctttttcaatagctgcatttcaaatttct |
1047 |
Q |
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| T |
4050699 |
taacttttactaataaaacaatgaagactacttctatagcattttgtttgttccatcatcttctaatagttctttttcaatagctgcatttcaaatttct |
4050600 |
T |
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| Q |
1048 |
-gatcgtgat |
1056 |
Q |
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| T |
4050599 |
ggatcgtgat |
4050590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 4051642 - 4051544
Alignment:
| Q |
8 |
actaggcaacaccagcttagaggatgctatatcttggatggttgatcatgagaatgacacagatattgatgagattccattggtactttcacaccctca |
106 |
Q |
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| T |
4051642 |
actaggcaacaccagcttagaggatgctatatcttggatggttgatcatgagaatgacacagatattgatgagattccattggtactttcacaccctca |
4051544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 521 - 563
Target Start/End: Complemental strand, 36181337 - 36181295
Alignment:
| Q |
521 |
ttggtctaacccaacccctataaaactggcttgtagagtgaca |
563 |
Q |
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| T |
36181337 |
ttggcctaactcaacccctataaaactggtttgtagagtgaca |
36181295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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