View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0467-Insertion-3 (Length: 1100)

Name: NF0467-Insertion-3
Description: NF0467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0467-Insertion-3
NF0467-Insertion-3
[»] chr4 (6 HSPs)
chr4 (78-836)||(24545880-24546669)
chr4 (915-1035)||(24545072-24545200)
chr4 (4-85)||(24546846-24546927)
chr4 (771-826)||(13948131-13948186)
chr4 (864-906)||(24545811-24545853)
chr4 (781-826)||(11869836-11869881)
[»] chr1 (2 HSPs)
chr1 (60-201)||(42936094-42936229)
chr1 (45-203)||(29114061-29114216)
[»] chr8 (1 HSPs)
chr8 (747-836)||(9554597-9554685)
[»] chr7 (1 HSPs)
chr7 (775-826)||(11223286-11223337)
[»] chr5 (1 HSPs)
chr5 (775-836)||(15638171-15638232)
[»] chr3 (2 HSPs)
chr3 (769-821)||(54313499-54313551)
chr3 (747-836)||(15242303-15242391)
[»] chr2 (1 HSPs)
chr2 (775-836)||(28188350-28188411)


Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 78 - 836
Target Start/End: Complemental strand, 24546669 - 24545880
Alignment:
Q  78 atatataaaaccactagagtatgatggatatatgcaagcttggatttgaggcttaacatcagtgtatgcatgttaatatatgtcttcatt---------- 167  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||              
T  24546669 atatataaaaccaccggagtatgatggatatacgcaagcttggatttgaggcttaacatcggtgcatgcatgttaatatatgtcttcattatatgtcttc 24546570  T
Q  168 ---cagtttcttcattaaacattggctcaaatgccaatgtatttttaagtatttctttttctcgggtatgagtttgttaatgtgtcaaaat-gtaaaaat 263  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  ||||||||    
T  24546569 attcagtttcttcattaaacattggctcaaatgccaatgtatttttaagtatttcttttgcttgggtatgagtttgttaatgtgtcaaaaaagtaaaaat 24546470  T
Q  264 tttacttttaaattatgataatcgagctaacaagtcaaaccgagtcattcgtgagcttggattttaaaatttttacttttaaagtatgataatcgagctg 363  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||     
T  24546469 tttacttttaaattatgataatcgagctaacaagtcgaaccgagttattcgtgagcttggattttaaaaattttacttttaaactatgataatcgagcta 24546370  T
Q  364 acaaaacgaaccgagtcgttcgtgagcttggaccgaattgagttcgagctcaaaataagattcgtcacgaatttaagtcaagtttcaagccgaacaaatt 463  Q
    |||||| ||||||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||    
T  24546369 acaaaaggaaccgagttgttcatgagcttggaccgaatcgagttcgagctcaaaataagatccgtcacgaatttaagtcaagttttaagctgaacaaatt 24546270  T
Q  464 tttatcaagt----------tgagttaagttcgacttaactcgactcatttccagccctaacgaaaatcttcgaaactg------ctca-aatcggtagc 546  Q
    ||||||||||          |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||      |||  ||||||||||    
T  24546269 tttatcaagtcgagccaagttgagttaagttcaacttagctcgactcatttccatccctaacgaaaatcttcgaagctgtagctgctcggaatcggtagc 24546170  T
Q  547 ttttgatatgctcatgaggagcaaattattagcaaagaggtttgtgtttgcagggaacatttgatgctcataaaggtgctagctcgcctacgtggagtct 646  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24546169 ttttgatatgctcatgaggagcaaattattagcaaagaggtttgtgtttgcagggaacatttgatgctcataaaggtgctagctcgcctacgtggagtct 24546070  T
Q  647 gaaatttgttagagaaacgctcgagatgagactagcaacatattctcgggcaagattttgctttcactcgcaaaatt-gtttgtcgatgaagtgacagtt 745  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||    
T  24546069 -taatttgttagagaaacgctcgagatgagactagcaacatattctcgggcaagattttgccttcgctcacaaaattggtttgtcgatgaagtgacagtt 24545971  T
Q  746 tgattccctcgacagagtgttgttcgtttgtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatggcatttggtt 836  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24545970 tgattccctcgacagagtgtcgttcgtttgtcctctcagcatttaatgcgagtgtctcgaggacgagactgaggggacatggcatttggtt 24545880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 915 - 1035
Target Start/End: Complemental strand, 24545200 - 24545072
Alignment:
Q  915 cttgttgtgtctgctgcacattatca-catgaattttgtggttgttgcatgcct-atgctagat--atac-cac-gggccctagttaagcgagaag-aaa 1007  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||  | || ||| ||||||||||||||||||||| |||    
T  24545200 cttgttgtgtctgctgcgcattatcaacatgaattttgtggttgttgcatgcctaatgctagattcaaacacacagggccctagttaagcgagaagaaaa 24545101  T
Q  1008 tcaaatt-atatgtgatgagcacatcaaa 1035  Q
    ||||||| |||||||||||||||||||||    
T  24545100 tcaaattaatatgtgatgagcacatcaaa 24545072  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 24546927 - 24546846
Alignment:
Q  4 aacatagagatgttgtttaaatttaaaccaatagtcttgcatcgacaatgtttgtgaaaactaaggaagcggtaatatataa 85  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||| ||| |||||||    
T  24546927 aacatagagatgtagtttaaatttaaaccaatagtcctgcatcgacaatgtttgtgaaaacaacggaagcagtagtatataa 24546846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 771 - 826
Target Start/End: Complemental strand, 13948186 - 13948131
Alignment:
Q  771 gtttgtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatg 826  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  13948186 gtttgtcctctcaacatttaatgtgaatgtctcgaggacgagactggggggacatg 13948131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 864 - 906
Target Start/End: Original strand, 24545811 - 24545853
Alignment:
Q  864 aggattgaatctacgattaagattaaacttggaaaacaaccac 906  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24545811 aggattgaatctacgattaagattaaacttggaaaacaaccac 24545853  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 781 - 826
Target Start/End: Complemental strand, 11869881 - 11869836
Alignment:
Q  781 tcaacatttaatgcgagtgtctcgaggacgagactgaggggacatg 826  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  11869881 tcaacatttaatgcccatgtctcgaggacgagactgaggggacatg 11869836  T

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Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 42936094 - 42936229
Alignment:
Q  60 aaaactaaggaagcggtaatatataaaaccactagagtatgatggatatatgcaagcttggatttgaggcttaacatcagtgtatgcatgttaatatatg 159  Q
    |||| ||||||||||||  |||||||||  || | |||||||||||||  |||||||||||||||||      ||||||||||||||| |||| || |||    
T  42936094 aaaaataaggaagcggttgtatataaaaagaccacagtatgatggatagttgcaagcttggatttga------acatcagtgtatgcacgttattacatg 42936187  T
Q  160 tcttcattcagtttcttcattaaacattggctcaaatgccaa 201  Q
    |  ||||| |||||||||||||||||||||||||||||||||    
T  42936188 tgctcatttagtttcttcattaaacattggctcaaatgccaa 42936229  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 29114061 - 29114216
Alignment:
Q  45 tcgacaatgtttgtgaaaactaaggaagcggtaatatataaaaccactagagtatgatggatatatgcaagcttggatttgaggcttaacatcagtgtat 144  Q
    |||||||||||| |||||  | || ||| ||| || ||||||||||| |   |||||  |||| ||||||| ||| |||||||| |||||    ||||||    
T  29114061 tcgacaatgtttttgaaagattagaaagaggttatgtataaaaccaccaacttatgagtgatagatgcaagtttgaatttgaggtttaacg---gtgtat 29114157  T
Q  145 gcatgttaatatatgtcttcattcagtttcttcattaaacattggctcaaatgccaatg 203  Q
      |||||||||| |||  ||||||| | ||||||||||||||||| |||||| ||||||    
T  29114158 agatgttaatatttgttctcattcaatctcttcattaaacattggatcaaattccaatg 29114216  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 9554685 - 9554597
Alignment:
Q  747 gattccctcgacagagtgttgttcgtttgtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatggcatttggtt 836  Q
    |||||||||  ||||| |||| ||||||||| | ||| || ||||||| ||||||||||||| ||||||||||||||||| | |||||||    
T  9554685 gattccctcatcagagagttggtcgtttgtcat-tcagcaattaatgccagtgtctcgaggatgagactgaggggacatgacctttggtt 9554597  T

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Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 775 - 826
Target Start/End: Complemental strand, 11223337 - 11223286
Alignment:
Q  775 gtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatg 826  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||| |||||    
T  11223337 gtcctctcaacatttaaagcgagtgtctcgaggatgagaccgagggaacatg 11223286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 775 - 836
Target Start/End: Complemental strand, 15638232 - 15638171
Alignment:
Q  775 gtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatggcatttggtt 836  Q
    ||||||||| ||||||||| ||||||||| |||| |||| |||||||||||| | |||||||    
T  15638232 gtcctctcagcatttaatgtgagtgtctcaaggaggagattgaggggacatgacctttggtt 15638171  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 769 - 821
Target Start/End: Complemental strand, 54313551 - 54313499
Alignment:
Q  769 tcgtttgtcctctcaacatttaatgcgagtgtctcgaggacgagactgagggg 821  Q
    |||||||||||| |||||||||||| |  || |||||||||||||||||||||    
T  54313551 tcgtttgtcctcccaacatttaatgtgcatgcctcgaggacgagactgagggg 54313499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 747 - 836
Target Start/End: Complemental strand, 15242391 - 15242303
Alignment:
Q  747 gattccctcgacagagtgttgttcgtttgtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatggcatttggtt 836  Q
    ||||||||||  |||| |||| ||||||||| | |||||| |||||||   ||||||||||  ||||||||||||||||| | |||||||    
T  15242391 gattccctcgttagagagttggtcgtttgtcat-tcaacaattaatgcccatgtctcgagggtgagactgaggggacatgacctttggtt 15242303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 775 - 836
Target Start/End: Complemental strand, 28188411 - 28188350
Alignment:
Q  775 gtcctctcaacatttaatgcgagtgtctcgaggacgagactgaggggacatggcatttggtt 836  Q
    ||||||||||||||||||| |||| | ||||||| || | |||||||||||| | |||||||    
T  28188411 gtcctctcaacatttaatgtgagtatatcgaggatgacattgaggggacatgacctttggtt 28188350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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