View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0467-Insertion-4 (Length: 801)

Name: NF0467-Insertion-4
Description: NF0467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0467-Insertion-4
NF0467-Insertion-4
[»] chr5 (10 HSPs)
chr5 (540-760)||(40383679-40383899)
chr5 (184-488)||(40383217-40383533)
chr5 (279-394)||(40383027-40383144)
chr5 (268-379)||(40366033-40366144)
chr5 (7-70)||(40365198-40365261)
chr5 (156-257)||(40364946-40365045)
chr5 (12-48)||(40364800-40364836)
chr5 (12-74)||(40375292-40375357)
chr5 (455-485)||(40364361-40364391)
chr5 (455-493)||(40383211-40383249)
[»] chr7 (5 HSPs)
chr7 (271-374)||(15492143-15492247)
chr7 (273-374)||(15433308-15433410)
chr7 (279-349)||(26222541-26222611)
chr7 (585-637)||(32537760-32537812)
chr7 (293-334)||(29238037-29238078)
[»] scaffold1694 (1 HSPs)
scaffold1694 (273-374)||(260-362)
[»] chr3 (3 HSPs)
chr3 (271-367)||(47813235-47813331)
chr3 (298-349)||(25031136-25031187)
chr3 (283-376)||(25297412-25297506)
[»] chr1 (3 HSPs)
chr1 (292-374)||(27092081-27092164)
chr1 (270-350)||(4285902-4285981)
chr1 (572-614)||(29916100-29916142)
[»] chr6 (1 HSPs)
chr6 (305-365)||(5089326-5089387)
[»] chr4 (1 HSPs)
chr4 (293-362)||(11131819-11131888)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 9e-60; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 540 - 760
Target Start/End: Original strand, 40383679 - 40383899
Alignment:
Q  540 ttgacttattttacacacgtatatatgttgctaacttagactaacctaaaaacatttaggttcaagttagaaagtatgtacttttttatttagacaaaga 639  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||   ||||||| |||| |||| ||||||||||||||||| |    
T  40383679 ttgacttattttacacacatatatatgttgctaacttagaccaacctaaaaacattaaggactaagttagcaagtgtgta-ttttttatttagacaaaaa 40383777  T
Q  640 tactcatttgttactagtgtgaggaagcaagatagagccaccgacgattttccaataagaacatgatcgca-caatgatgaaccttaaacctttatcttt 738  Q
     |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |  ||||||||| ||||||| ||| ||||||| ||||||||    
T  40383778 cactcatttgttacttgtgtgaggaagcaagatagggccaccgacgatttttcaataacattatgatcgcaccaatgatcaacattaaaccattatcttt 40383877  T
Q  739 taactttaatcttagatgtact 760  Q
    | |||||| |||| ||||||||    
T  40383878 ttactttagtcttggatgtact 40383899  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 184 - 488
Target Start/End: Original strand, 40383217 - 40383533
Alignment:
Q  184 tatttggatttgttattcgagtaaagaacaactcggcattgcttgagttgacttttactactatagtataaaaatctgcc-ctctagcaaaattacataa 282  Q
    |||||||||||||||||| | |||  |||||||| |||||| ||| |||||||| || || |||| ||||||||  ||   ||| | |||||||  ||||    
T  40383217 tatttggatttgttattctaataataaacaactctgcattgtttgggttgacttcta-tagtatactataaaaaaatggtactccaccaaaattttataa 40383315  T
Q  283 ttatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataa-aaactaacttattcattttttgaaaatttatttt- 380  Q
    | ||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||     
T  40383316 tcatcttcggttaaactcataatcttgttaattttatgggtccaatcgtcatttttcaatataataaactaacttatatattttttgaaaatttatttta 40383415  T
Q  381 ----aagggatgcaatgtctgaacnnnnnnnatttcccaaatgaaagtgataaggacgatcccagcttgcaac------ctgtctaatgctatttgaatt 470  Q
        | |||||||||||||  |||       |||||||||||||| |||||| | ||||||||| ||||||||       ||| |||||||| ||| |||    
T  40383416 taagatgggatgcaatgtcaaaactttttttatttcccaaatgaatgtgatatgtacgatcccaacttgcaactttttattgtttaatgctacttggatt 40383515  T
Q  471 tgttattctaataaaaaa 488  Q
    |||||||| |||||||||    
T  40383516 tgttattcaaataaaaaa 40383533  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 279 - 394
Target Start/End: Original strand, 40383027 - 40383144
Alignment:
Q  279 ataattatctttggttaaactcatattcttcttaatttt-atgggttcaatcgtcatttttcaaaataaaaac-taacttattcattttttgaaaattta 376  Q
    |||| |||||| | ||||||||| | ||||||||||||| |||||| |||||  |||||| |||||||||||  ||||||||| ||||||||||||||||    
T  40383027 ataactatcttcgattaaactcaaaatcttcttaatttttatgggtccaatcaccattttccaaaataaaaaaataacttatttattttttgaaaattta 40383126  T
Q  377 ttttaagggatgcaatgt 394  Q
    ||| | ||||||||||||    
T  40383127 tttcatgggatgcaatgt 40383144  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 268 - 379
Target Start/End: Original strand, 40366033 - 40366144
Alignment:
Q  268 agcaaaattacataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaat-aaaaactaacttattcattttt 366  Q
    |||||||||  ||||||||  | ||||||||| ||| |||| ||||||||||||||||||||||||||||  | ||| ||||||||| ||||| ||||||    
T  40366033 agcaaaattttataattattatcggttaaacttataatctttttaattttatgggttcaatcgtcattttgtagaataaaaaactaatttatt-attttt 40366131  T
Q  367 tgaaaatttattt 379  Q
    |||||||||||||    
T  40366132 tgaaaatttattt 40366144  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 40365198 - 40365261
Alignment:
Q  7 aaaataaacacatttcaaattttaaaataaaaaattcagactgaactttgggttttaaaagagc 70  Q
    |||| |||||||||||||||||||||||||||||| |||||  || |||||||||| |||||||    
T  40365198 aaaaaaaacacatttcaaattttaaaataaaaaatccagacataattttgggtttttaaagagc 40365261  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 40364946 - 40365045
Alignment:
Q  156 aataacaactcttaattgtttaatgctatatttggatttgttattcgagtaaagaacaactcggcattgcttgagttgacttttactactatagtataaa 255  Q
    |||| ||||| || ||||||||||||  |||||||| ||||||||| | |||||||||| ||  | ||||||| |||||||| ||||||||||  |||||    
T  40364946 aatagcaactttttattgtttaatgc--tatttggacttgttattcaaataaagaacaagtcatctttgcttgggttgacttctactactatacgataaa 40365043  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 40364800 - 40364836
Alignment:
Q  12 aaacacatttcaaattttaaaataaaaaattcagact 48  Q
    ||||||||||||||||||||||||||||||| |||||    
T  40364800 aaacacatttcaaattttaaaataaaaaatttagact 40364836  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 40375292 - 40375357
Alignment:
Q  12 aaacacatttcaaattttaaaat---aaaaaattcagactgaactttgggttttaaaagagcgcac 74  Q
    ||||| |||||||||||||||||   ||||||||||||||||| |||| ||||  |||||||||||    
T  40375292 aaacatatttcaaattttaaaataaaaaaaaattcagactgaattttgagtttctaaagagcgcac 40375357  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 485
Target Start/End: Original strand, 40364361 - 40364391
Alignment:
Q  455 taatgctatttgaatttgttattctaataaa 485  Q
    |||||||||||||||||||||||||||||||    
T  40364361 taatgctatttgaatttgttattctaataaa 40364391  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 455 - 493
Target Start/End: Original strand, 40383211 - 40383249
Alignment:
Q  455 taatgctatttgaatttgttattctaataaaaaacaact 493  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  40383211 taatgctatttggatttgttattctaataataaacaact 40383249  T

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Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 271 - 374
Target Start/End: Original strand, 15492143 - 15492247
Alignment:
Q  271 aaaattacataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa-ctaacttattcattttttga 369  Q
    |||||| |||||||||| ||   |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||| ||||||| |    
T  15492143 aaaatttcataattatcgttaactaaactcataatcttcttaattttatgggttcattcgtcattttacaaaataaaaatctaatttatttattttttaa 15492242  T
Q  370 aaatt 374  Q
    |||||    
T  15492243 aaatt 15492247  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 15433308 - 15433410
Alignment:
Q  273 aattacataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa-ctaacttattcattttttgaaa 371  Q
    |||| |||||||||| | | ||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||| |||| ||||| ||||||| |||    
T  15433308 aatttcataattatcgtcgattaaactcataatcttcttaattttatgggttcattcgtcattttacaatataaaaatctaatttatttattttttaaaa 15433407  T
Q  372 att 374  Q
    |||    
T  15433408 att 15433410  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 26222541 - 26222611
Alignment:
Q  279 ataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa 349  Q
    ||||||||| | | ||||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||    
T  26222541 ataattatcctcgattaaacttataatcttcttaattttatgggttcaatcgtcattttataaaataaaaa 26222611  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 585 - 637
Target Start/End: Complemental strand, 32537812 - 32537760
Alignment:
Q  585 ctaaaaacatttaggttcaagttagaaagtatgtacttttttatttagacaaa 637  Q
    |||||| |||| ||||| ||||||| || ||||||||||||||||||||||||    
T  32537812 ctaaaatcattaaggtttaagttagtaaatatgtacttttttatttagacaaa 32537760  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 29238037 - 29238078
Alignment:
Q  293 ttaaactcatattcttcttaattttatgggttcaatcgtcat 334  Q
    ||||||||||| |||||||||||||||| || ||||||||||    
T  29238037 ttaaactcataatcttcttaattttatgcgtccaatcgtcat 29238078  T

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Target: scaffold1694 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 362 - 260
Alignment:
Q  273 aattacataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa-ctaacttattcattttttgaaa 371  Q
    |||| |||||||||| | | ||||||||||| |||||||||||||||||||||| |||| ||||| ||| ||||||| |||| ||||| ||||||| |||    
T  362 aatttcataattatcgtcgattaaactcataatcttcttaattttatgggttcattcgtaattttacaatataaaaatctaatttatttattttttaaaa 263  T
Q  372 att 374  Q
    |||    
T  262 att 260  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 367
Target Start/End: Complemental strand, 47813331 - 47813235
Alignment:
Q  271 aaaattacataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa-ctaacttattcatttttt 367  Q
    |||||| |||||||||| | | ||||||||||| || ||||| |||||||| ||||||||||| ||| ||||||||||| |||| |||||||||||||    
T  47813331 aaaatttcataattatcctcgattaaactcataatcctctta-ttttatggattcaatcgtcagtttacaaaataaaaatctaatttattcatttttt 47813235  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 25031187 - 25031136
Alignment:
Q  298 ctcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa 349  Q
    |||||| | |||||||||||||| ||| |||||||||||| |||||||||||    
T  25031187 ctcataatattcttaattttatgagttaaatcgtcattttgcaaaataaaaa 25031136  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 25297412 - 25297506
Alignment:
Q  283 ttatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaa-ctaacttattcattttttgaaaattta 376  Q
    ||||||| |||||||||||   |||||||| ||||| | |  |||  |||||||| ||||||||||| |||| ||||||||||||| ||||||||    
T  25297412 ttatcttcggttaaactcaagatcttcttatttttacgtgcacaagggtcattttgcaaaataaaaaactaatttattcattttttaaaaattta 25297506  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 374
Target Start/End: Original strand, 27092081 - 27092164
Alignment:
Q  292 gttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaac-taacttattcattttttgaaaatt 374  Q
    |||||||| ||| |||||| ||||||||| |||||| |||||||||  ||||||||||  ||| ||||||||||||||||||||    
T  27092081 gttaaacttataatcttctaaattttatgagttcaaccgtcattttggaaaataaaaaagtaatttattcattttttgaaaatt 27092164  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 4285902 - 4285981
Alignment:
Q  270 caaaattacataattatctttggttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaac 350  Q
    ||||||| |||||||| ||| ||| ||||||||| ||| |||||||||||||| || || |||||||| |||| |||||||    
T  4285902 caaaatttcataattaacttcggtaaaactcataatctacttaattttatggg-tcgattgtcattttgcaaattaaaaac 4285981  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 614
Target Start/End: Complemental strand, 29916142 - 29916100
Alignment:
Q  572 aacttagactaacctaaaaacatttaggttcaagttagaaagt 614  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||    
T  29916142 aacttagaccaacctaaaaacattaaggttcaagttagcaagt 29916100  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 5089326 - 5089387
Alignment:
Q  305 tcttcttaattttatgggttcaatcgtcatttttcaaaataaaa-actaacttattcatttt 365  Q
    |||||||||||||||||||| |||||||||||| |||||||||| || || |||||||||||    
T  5089326 tcttcttaattttatgggtttaatcgtcattttacaaaataaaatacaaatttattcatttt 5089387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 11131819 - 11131888
Alignment:
Q  293 ttaaactcatattcttcttaattttatgggttcaatcgtcatttttcaaaataaaaactaacttattcat 362  Q
    ||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||  ||| ||||||||    
T  11131819 ttaaactaataatcttcttacttttatgggttcaattgtcattttacaaaataaaatttaatttattcat 11131888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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