View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0467-Insertion-6 (Length: 347)
Name: NF0467-Insertion-6
Description: NF0467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0467-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 31398603 - 31398738
Alignment:
| Q |
8 |
aaatgaccacttcacattgtttctgaatcgagaaatagaaaaaagtattttaaggccaattcaatcgatttaccatgaatgaaattatataaaataaaaa |
107 |
Q |
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| T |
31398603 |
aaatgaccacttcacattgtttctgaatcgagaaatagaaaaaagtattttaaggccaattcaatcgatttaccatgaatgaaattatataaaataaaaa |
31398702 |
T |
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| Q |
108 |
atacgggatgcgtggaattaaatacaattatcttcc |
143 |
Q |
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| T |
31398703 |
atacgggatgcgtggaattaaatacaattatcttcc |
31398738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 31398728 - 31398842
Alignment:
| Q |
168 |
aattatcttcctttttatgataggcaaggatcacaacagaaaagaaaacaaattggtatatacaatccacaaaacgattgcaaaccgttaaattttaagt |
267 |
Q |
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| T |
31398728 |
aattatcttcctttttatgataggcaaggatcacaacagaaaagaaaacaaattggtatatacaatccacaaaacgattgcaaaccgttaaattttaagt |
31398827 |
T |
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| Q |
268 |
tatgtaatcggaagg |
282 |
Q |
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| T |
31398828 |
tatgtaatcggaagg |
31398842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 31373150 - 31373244
Alignment:
| Q |
190 |
ggcaaggatcacaacagaaaagaaaacaaattg---gtatatacaatccacaaaacgattgcaaaccgttaaattttaagttatgtaatcggaag |
281 |
Q |
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| T |
31373150 |
ggcaatgatcacaatagaaaagaaaacaaattgacagtatatacaatccataaaacgattgcaaaccgttacattttaagttatgtaatcggaag |
31373244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 31373009 - 31373100
Alignment:
| Q |
56 |
tttaaggccaattcaatcgatttaccatgaatgaaattatataaaataaaaaatacgggatgcgtggaattaa----atacaattatcttcc |
143 |
Q |
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| T |
31373009 |
tttaaggccacttcaatcgatttaccatgaatgaaattatataaaataacaaatacgggatgactggaattaaaacgatacaattatcttcc |
31373100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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