View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0467-Insertion-9 (Length: 180)

Name: NF0467-Insertion-9
Description: NF0467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0467-Insertion-9
NF0467-Insertion-9
[»] chr4 (1 HSPs)
chr4 (8-180)||(21345204-21345376)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 6e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 21345376 - 21345204
Alignment:
Q  8 aaaagttgctgctactgccactgaaactgcagtctcaggcagggcagacgagactgtgaatgatctccttgtttgcaattgtaacttcgcatctaatcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  21345376 aaaagttgctgctactgccactgaaactgcagtctcaggcagggcaggcgagactgcgaatgatctccttgtttgtaattgtgacttcgcatctaatcaa 21345277  T
Q  108 gaaaatcaaatgagagcagcaaatacaccattcccttttcattttacaacatcaactgtaagttagccataag 180  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21345276 gaaaataaaatgagagcagcaaatacaccattcccttttcattttacaacatcaacggtaagttagccataag 21345204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University