View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0468_high_2 (Length: 366)
Name: NF0468_high_2
Description: NF0468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0468_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 30 - 360
Target Start/End: Original strand, 51761299 - 51761629
Alignment:
| Q |
30 |
gtagctagtgtgttaattaattattacatgttgttaatcaataa-----tataattgtgagatcgtgggaggtggcaaaaatatcaatattaaatatgac |
124 |
Q |
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| T |
51761299 |
gtagctagtgtgttaattagttattacatgttgttaatcaataatataatataattgtgagatcgtgggaggtggcaaaaatatcaatattaaatatgac |
51761398 |
T |
|
| Q |
125 |
ttagagatcttgactcacttccattccaaaggcaccaacatttcccttccctataaataaaagccatctccccttactctactcaatcacactcactctt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51761399 |
ttagagatcttgactcacttccattccaaaggcaccaacatttcccttccctataaataaaagccatctccccttactctactgaatcacactcactctt |
51761498 |
T |
|
| Q |
225 |
annnnnnnnnnnnnnnnnnnttcctctaatttcttaatccttttgttcttcttttctttgtgatataaacaaaaaatgatgcaaacacataactccctca |
324 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761499 |
a-----aacacaacacaacattcctctaatttcttaatccttttgttcttcttttctttgtgatataaacaaaaaatgatgcaaacacataactccctca |
51761593 |
T |
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| Q |
325 |
cactccttgctttcttcatgatcttgttcatctcac |
360 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||| |
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| T |
51761594 |
cactccatgctttcttcatgatcttgttcatgtcac |
51761629 |
T |
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