View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0468_low_1 (Length: 771)

Name: NF0468_low_1
Description: NF0468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0468_low_1
NF0468_low_1
[»] chr8 (5 HSPs)
chr8 (236-708)||(27846027-27846501)
chr8 (98-244)||(27844811-27844956)
chr8 (344-465)||(35612307-35612428)
chr8 (344-414)||(42199089-42199159)
chr8 (342-460)||(17640469-17640587)
[»] chr7 (4 HSPs)
chr7 (334-690)||(31402291-31402646)
chr7 (334-707)||(3885239-3885614)
chr7 (334-707)||(3899150-3899529)
chr7 (404-525)||(18222806-18222927)
[»] chr3 (2 HSPs)
chr3 (333-651)||(25897940-25898260)
chr3 (352-439)||(24596147-24596234)
[»] chr4 (2 HSPs)
chr4 (338-668)||(3575073-3575401)
chr4 (344-583)||(29016751-29016988)
[»] chr1 (6 HSPs)
chr1 (350-581)||(30839575-30839806)
chr1 (353-528)||(27644623-27644798)
chr1 (352-588)||(12460048-12460284)
chr1 (356-525)||(4049733-4049902)
chr1 (404-527)||(51493085-51493208)
chr1 (476-576)||(44138322-44138422)
[»] scaffold0010 (1 HSPs)
scaffold0010 (356-528)||(237960-238132)
[»] chr5 (5 HSPs)
chr5 (344-465)||(29291608-29291729)
chr5 (344-436)||(24011642-24011734)
chr5 (359-527)||(42578036-42578204)
chr5 (404-463)||(13093762-13093821)
chr5 (423-505)||(21485931-21486013)
[»] chr2 (4 HSPs)
chr2 (344-465)||(4018378-4018499)
chr2 (344-504)||(8072297-8072457)
chr2 (344-465)||(24465996-24466117)
chr2 (350-401)||(26659402-26659453)
[»] chr6 (2 HSPs)
chr6 (344-504)||(21951122-21951282)
chr6 (358-588)||(16861820-16862050)
[»] scaffold0703 (1 HSPs)
scaffold0703 (358-588)||(946-1176)


Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 236 - 708
Target Start/End: Original strand, 27846027 - 27846501
Alignment:
Q  236 cttgaaacccattagaacagtaatacatacatacacctctaattttctttgactcccaaaaagaataatacatacatctctaatttattttgtcttccac 335  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  27846027 cttgaaacgcattagaacaataatacatacatacacctctaattttctttgactcccaaaaacaataatacatacacctctaatttattttgtcgtccac 27846126  T
Q  336 ccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatattt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  27846127 ccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaaggaaatattt 27846226  T
Q  436 ggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaa 535  Q
    |||||||||| ||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27846227 ggcttttagggtacgactaagtaaggagctgaaattattcaggagtttccaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaa 27846326  T
Q  536 ccgagtccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacaaccattcttcttagaaacccaatagaatgaattca 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  27846327 ccgagtccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacgaccattcttctaagaaacccaatagaatgaattca 27846426  T
Q  636 tta--cgttcaatctcatcacataaggtggaaggaaggaaaaaggcacccatacaatgaggcggaataacttgac 708  Q
    |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27846427 ttattcgttcactctcatcacataaggtggaaggaaggaaaaaggcacccatacaatgaggtggaataacttgac 27846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 27844811 - 27844956
Alignment:
Q  98 ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatacttctttttaat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27844811 ctttttaagtgtcttagaaatatatacctctaataatcatagtgtttagcttgaatcttatgtaagactaggacacataatgtatatatttctttttaat 27844910  T
Q  198 aagaagcaagnnnnnnnattaaagaggtataaagggtacttgaaacc 244  Q
    ||||||||||       ||||||||||||||| ||||||||||||||    
T  27844911 aagaagcaag-ttttttattaaagaggtataacgggtacttgaaacc 27844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 465
Target Start/End: Complemental strand, 35612428 - 35612307
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||||| | |||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||||||||| ||||  | ||| |||||||||||||| |    
T  35612428 ataaggtctcgggaactccaaatgctcctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttga 35612329  T
Q  444 ggatacgagtaagtaaggagct 465  Q
    | || ||||| |||||||||||    
T  35612328 gaatgcgagtgagtaaggagct 35612307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 344 - 414
Target Start/End: Original strand, 42199089 - 42199159
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaa 414  Q
    ||||||| | |||||||||| ||||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  42199089 ataaggtctcgggaactccagatgctcctccatgtataacttggattgtgaccaatattagcatccaagaa 42199159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 460
Target Start/End: Original strand, 17640469 - 17640587
Alignment:
Q  342 tgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttt 441  Q
    ||||||| |||||||| |||||  | |||||||||||| |  ||||||| || ||||||   || ||||||||| || ||||| ||||||||||||| ||    
T  17640469 tgataagattttgggatctccatgtactcctccatgtataacttggattatgtccaataccggcttccaagaaacccttcctaagaaaatatttggcatt 17640568  T
Q  442 taggatacgagtaagtaag 460  Q
     || || || |||||||||    
T  17640569 gagaatgcgtgtaagtaag 17640587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 334 - 690
Target Start/End: Complemental strand, 31402646 - 31402291
Alignment:
Q  334 acccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatat 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||| ||||| |  |||    
T  31402646 acccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagcttggattatgaccaatatttgcatccgagatatcccttctagggag-tat 31402548  T
Q  434 ttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcaga 533  Q
    |||||||| || |||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||| | || |||||||||| |||||||||||    
T  31402547 ttggctttgagaatacgagtaagtaaggagctagaatcattgaggagtttccaaccttgtttaccgagcatagacaagttgaaagcttacatgtttcaga 31402448  T
Q  534 aaccgagtccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacaaccattcttcttagaaacccaatagaatgaatt 633  Q
    |||||||| | ||||||||||||||||||||||  |||||||||||| | |||||||| | |||||  ||||||||||||||| ||||||| ||||||||    
T  31402447 aaccgagttctcctgaacttttgtgcaaggtaactttatcccatctctttcaattaattcctccacggccattcttcttagaaccccaataaaatgaatt 31402348  T
Q  634 catta--cgttcaatctcatcacataaggtggaaggaaggaaaaaggcacccatacaat 690  Q
    |||||  ||||||||||||||||||  |||||||||||||| ||| |||| ||||||||    
T  31402347 cattattcgttcaatctcatcacat--ggtggaaggaaggagaaaagcactcatacaat 31402291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 334 - 707
Target Start/End: Original strand, 3885239 - 3885614
Alignment:
Q  334 acccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatat 433  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  3885239 acccacagtgataaggttttgggaactccaaatgctcccccatgtaaatcctggattgtgaccaatatttgcatccaagaaatccctcatatgaaaatat 3885338  T
Q  434 ttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcaga 533  Q
    |||||||| || ||||||||||| |||||||| |||||| | | |||||| ||||  |||||||| |||||| |||||||||||||||||||| ||   |    
T  3885339 ttggctttgagaatacgagtaagcaaggagctagaatcaatgacgagtttccaaccttgtttaccaagcatatataaattgaaagcttccatgctttgca 3885438  T
Q  534 aaccgagtccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacaaccattcttcttagaaacccaatagaatgaatt 633  Q
    |||| |   | ||||||||||||||||  |||| |||||||||||||||||||||| | | |||||||||||||||| || || || |||| ||||||||    
T  3885439 aaccaatcgcccctgaacttttgtgcatagtaagcttatcccatctcatccaattagttcctccacaaccattcttcgtaaaaccctaatataatgaatt 3885538  T
Q  634 catta--cgttcaatctcatcacataaggtggaaggaaggaaaaaggcacccatacaatgaggcggaataacttga 707  Q
    |||||  ||||||||||||| ||||||||| |||||||||| ||||||||||||| ||| || ||||||| |||||    
T  3885539 cattattcgttcaatctcataacataaggtagaaggaaggagaaaggcacccatataataagacggaatagcttga 3885614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 334 - 707
Target Start/End: Original strand, 3899150 - 3899529
Alignment:
Q  334 acccaaagtgataaggttttgggaact---ccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaa 430  Q
    ||||||||  |||||||||||||||||   |||||||||||||||||||||   || ||||||||||||||||||||||| ||||||||||||||| |||    
T  3899150 acccaaagcaataaggttttgggaactgatccaaatgctcctccatgtaaatcctgaattgtgaccaatatttgcatccacgaaatccctcctagggaaa 3899249  T
Q  431 tatttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttc 530  Q
    ||||||||||| || ||| ||||||||||||||||  ||||||| |||||||| ||||  |||||| |||||||| |||||||||||||||||||||||     
T  3899250 tatttggctttcagaatatgagtaagtaaggagctacaatcattgaggagtttccaaccttgtttatcgagcatagataaattgaaagcttccatgtttt 3899349  T
Q  531 agaaaccgagt--ccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacaaccattcttcttagaaaccc-aatagaa 627  Q
    | |||||| ||  || |||||||||||||||||||||| ||||||||||||||||||||||||   ||||| ||||||||| |||| ||||| |||| ||    
T  3899350 aaaaaccg-gtccccccctgaacttttgtgcaaggtaagcttatcccatctcatccaattaatttctccacgaccattctt-ttaggaaccctaatataa 3899447  T
Q  628 tgaattcatta--cgttcaatctcatcacataaggtggaaggaaggaaaaaggcacccatacaatgaggcggaataacttga 707  Q
    |||||||||||  | || |||||||| |||||||||||||||||||| ||||||| ||||| ||| || | ||| |||||||    
T  3899448 tgaattcattattctttaaatctcataacataaggtggaaggaaggagaaaggcatccatataataagacagaacaacttga 3899529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 404 - 525
Target Start/End: Original strand, 18222806 - 18222927
Alignment:
Q  404 gcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagca 503  Q
    ||||||||||||||||| |  || ||||||||| |||| |||||||||||||||||| || | || ||  ||| |||||||||||  || ||||| | ||    
T  18222806 gcatccaagaaatcccttcgcgggaaatatttgactttcaggatacgagtaagtaagcaggtagattcggtcaagagttttcaactttgcttaccaaaca 18222905  T
Q  504 taaataaattgaaagcttccat 525  Q
    | || | |||||||||||||||    
T  18222906 ttaaaagattgaaagcttccat 18222927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 333 - 651
Target Start/End: Complemental strand, 25898260 - 25897940
Alignment:
Q  333 cacccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaata 432  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||  |||| || ||    
T  25898260 cacctaaagtgataaggttttgggaactccaaatgctccttcatgtaaagcttggatcgtgaccaatagttgcatccaagaaatcccttttagggaagta 25898161  T
Q  433 tttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcag 532  Q
    ||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||| |||| ||||||||||||||||||  |    
T  25898160 tttggctttgagaatacgagtaagtaaggagctagaatcattgaggagtttccaaccttgtttaccgagcatacataagttgaaagcttccatgttttgg 25898061  T
Q  533 aaaccgagtccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacaaccattcttcttagaaacccaatagaatgaat 632  Q
    |||| |||||| ||||||||||||||||||||||  |||||||||| |||||||||||| ||||||| | |||||||||||||| ||||||| |||||||    
T  25898060 aaactgagtccccctgaacttttgtgcaaggtaagtttatcccatcgcatccaattaattcatccacgatcattcttcttagaaccccaataaaatgaat 25897961  T
Q  633 tcatta--cgttcaatctcat 651  Q
    ||| ||  |||||||||||||    
T  25897960 tcaatattcgttcaatctcat 25897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 24596147 - 24596234
Alignment:
Q  352 ttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggct 439  Q
    ||||| ||||||||  |||||||||||  || ||||||||||||||| |  ||||||||||||||| |  | |||||| |||||||||    
T  24596147 ttgggcactccaaagactcctccatgtgtagcttggattgtgaccaaaaggtgcatccaagaaatctcgacgaggaaagtatttggct 24596234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 338 - 668
Target Start/End: Original strand, 3575073 - 3575401
Alignment:
Q  338 aaagtgataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtga-------ccaatatttgcatccaagaaatccctcctaggaaaa 430  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||       |||||| ||||||| || |||||||| | ||| ||     
T  3575073 aaagtgataaggttttgggaactccaaatactcctccatgtaaagcttggattgtgagttgtgaccaatagttgcatcgaaaaaatcccttcgagggaag 3575172  T
Q  431 tatttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttc 530  Q
    ||||||||||| || | || ||||||||        |||||||| ||  |||| ||||  ||||||| ||| ||| |||| ||||||||| | ||||||     
T  3575173 tatttggctttaagaagacaagtaagta--------gaatcattgagtcgtttccaaccttgtttactgagtatagataagttgaaagctacaatgtttt 3575264  T
Q  531 agaaaccgagtccacctgaacttttgtgcaaggtaaacttatcccatctcatccaattaatgcatccacaaccattcttcttagaaacccaatagaatga 630  Q
     ||||   ||| | ||| |||||||||| || ||||  ||| ||||||||||||||||||| | |||||||  ||||||||||||| ||||||| |||||    
T  3575265 ggaaa---agttcccctaaacttttgtggaaagtaagtttagcccatctcatccaattaattcctccacaaaaattcttcttagaaccccaataaaatga 3575361  T
Q  631 attcatta--cgttcaatctcatcacataaggtggaagga 668  Q
    ||||||||  |||||| |||||||||| ||||||||||||    
T  3575362 attcattattcgttcactctcatcacacaaggtggaagga 3575401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 344 - 583
Target Start/End: Complemental strand, 29016988 - 29016751
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||| ||||| |||||||| ||||||||||| ||| || |||||||||||||||||   | ||||||||||||||| ||||| || ||    ||||| |    
T  29016988 ataagattttgagaactccatatgctcctccaagtatagcttggattgtgaccaatacgggaatccaagaaatcccttctagggaagta--gagctttga 29016891  T
Q  444 ggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaaccgagtcc 543  Q
      ||| |||  |||||||||||   |||| | |||||||| ||||  ||||||||||||||| | |||||||| ||||| ||||| |  ||||| |||||    
T  29016890 taatatgagatagtaaggagctatgatcagttaggagtttccaaccttgtttaccgagcatagaaaaattgaaggcttctatgttacgaaaaccaagtcc 29016791  T
Q  544 acctgaacttttgtgcaaggtaaacttatcccatctcatc 583  Q
     ||||||||||| || ||| |||  |||||||| ||||||    
T  29016790 ccctgaacttttatgtaagctaagtttatcccacctcatc 29016751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 350 - 581
Target Start/End: Complemental strand, 30839806 - 30839575
Alignment:
Q  350 ttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatac 449  Q
    |||||||||||||||||||||||||| ||| || ||||||| ||| | |||   || || |||||| ||| ||||| ||||||||| ||||| || |||     
T  30839806 ttttgggaactccaaatgctcctccaagtatagcttggattatgatctataccagcctctaagaaaccccgcctagaaaaatattttgctttgagaatat 30839707  T
Q  450 gagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaaccgagtccacctga 549  Q
    |||| ||||||||||| | ||| || |||||||| ||||  |||||||| |||||| | | ||||||||||||||||||||  ||||| || | ||||||    
T  30839706 gagtgagtaaggagctaggatctttgaggagtttccaaccttgtttaccaagcatagagagattgaaagcttccatgtttcgaaaaccaagacaacctga 30839607  T
Q  550 acttttgtgcaaggtaaacttatcccatctca 581  Q
    ||| |||||    || ||||||||||||||||    
T  30839606 actcttgtgatgcgttaacttatcccatctca 30839575  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 353 - 528
Target Start/End: Original strand, 27644623 - 27644798
Alignment:
Q  353 tgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacgag 452  Q
    |||| ||||||||  |||||||| ||| || ||||||| ||||||| |   ||||||||||||||||| |  || |||||||||||||| ||||||||||    
T  27644623 tgggtactccaaagactcctccaagtatagcttggattatgaccaagagaggcatccaagaaatccctacgcgggaaatatttggctttgaggatacgag 27644722  T
Q  453 taagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtt 528  Q
    ||||||||||| | || ||  ||| |||||| ||||  |||||||| |||||  | | ||||||||||||||||||    
T  27644723 taagtaaggaggtagagtcggtcaagagtttccaactttgtttaccaagcattgaaagattgaaagcttccatgtt 27644798  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 352 - 588
Target Start/End: Original strand, 12460048 - 12460284
Alignment:
Q  352 ttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacga 451  Q
    ||||| ||||||||  |||||||||||| || ||||||| ||||||| |  ||| |||||||||||||  | ||| |||||||||||||| |||| ||||    
T  12460048 ttgggtactccaaagactcctccatgtatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacga 12460147  T
Q  452 gtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaaccgagtccacctgaac 551  Q
    |||||||||||  | || ||  ||| |||||| ||||  || |||||||||||| | | |||||| |||||||  || |  ||||| || |||||   ||    
T  12460148 gtaagtaaggaatttgagtctgtcatgagtttccaactttgcttaccgagcatagaaagattgaatgcttccaaattgcgaaaaccaaggccaccaagac 12460247  T
Q  552 ttttgtgcaaggtaaacttatcccatctcatccaatt 588  Q
    |||||||||| || |  || |||||||||||||||||    
T  12460248 ttttgtgcaaagtgagtttctcccatctcatccaatt 12460284  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 356 - 525
Target Start/End: Original strand, 4049733 - 4049902
Alignment:
Q  356 gaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaa 455  Q
    |||||||||||||||||||| ||  || |||||||||| |  || || || |||||||||| ||   | || |||||||| ||||| ||||||| ||| |    
T  4049733 gaactccaaatgctcctccacgtgtagcttggattgtggctgatgttggcttccaagaaattccatttggggaaatatttagctttgaggatacaagtga 4049832  T
Q  456 gtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccat 525  Q
    |||||||||| |  || || |||||||| || |  |||||||| |||||||||| |||||||||||||||    
T  4049833 gtaaggagctagggtcttttaggagtttccatccttgtttaccaagcataaatagattgaaagcttccat 4049902  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 404 - 527
Target Start/End: Original strand, 51493085 - 51493208
Alignment:
Q  404 gcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagca 503  Q
    ||||||||||||||| | ||||| || ||||| ||||| |||| |||||||||||||||  | || ||  | |||||||| ||||  || ||||||||||    
T  51493085 gcatccaagaaatccattctagggaagtatttagctttgaggacacgagtaagtaaggaatttgagtcggtgaggagtttccaactttgcttaccgagca 51493184  T
Q  504 taaataaattgaaagcttccatgt 527  Q
    |  | | |||||||||||||||||    
T  51493185 ttgagagattgaaagcttccatgt 51493208  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 476 - 576
Target Start/End: Complemental strand, 44138422 - 44138322
Alignment:
Q  476 aggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaaccgagtccacctgaacttttgtgcaaggtaaacttatccc 575  Q
    |||||||| ||||  || ||||| |||||| ||||||||||||||||||||||||  || ||||| || ||  |||||||||| |  || ||||||||||    
T  44138422 aggagtttccaactttgcttaccaagcatagataaattgaaagcttccatgtttcgaaagccgaggcctcccaaacttttgtggagagttaacttatccc 44138323  T
Q  576 a 576  Q
    |    
T  44138322 a 44138322  T

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Target: scaffold0010 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 528
Target Start/End: Original strand, 237960 - 238132
Alignment:
Q  356 gaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaa 455  Q
    |||||||| ||||||||||| || ||| |||||||||| |||||||| ||||||||||||||||  | ||| |||||||| ||||| || || ||||| |    
T  237960 gaactccatatgctcctccaagtgaagcttggattgtggccaatattggcatccaagaaatcccgacgagggaaatatttagctttgagaattcgagtga 238059  T
Q  456 gtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtt 528  Q
    |||||||||| | |||| | |||||||| ||||  |||| ||| |||||| | |  ||||| |||||||||||    
T  238060 gtaaggagctaggatcagttaggagtttccaaccttgttaaccaagcatagagaggttgaatgcttccatgtt 238132  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 465
Target Start/End: Complemental strand, 29291729 - 29291608
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||||| | |||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||||||||| ||||  | ||| |||||||||||||| |    
T  29291729 ataaggtctcgggaactccaaatgctcctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttga 29291630  T
Q  444 ggatacgagtaagtaaggagct 465  Q
    | || ||||| |||||||||||    
T  29291629 gaatgcgagtgagtaaggagct 29291608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 344 - 436
Target Start/End: Original strand, 24011642 - 24011734
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttg 436  Q
    ||||| ||||| ||||| || ||||||||||| ||| || || |||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  24011642 ataagattttgagaacttcatatgctcctccaagtataggttagattgtgaccaatattggcatccaagaaatcccttctaggaaagtatttg 24011734  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 527
Target Start/End: Original strand, 42578036 - 42578204
Alignment:
Q  359 ctccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaagta 458  Q
    |||||||  |||||||||||  || ||||||| || |||| |   ||||||||||||||||| ||||| || ||||| ||||  |||| |||||||||||    
T  42578036 ctccaaagactcctccatgtgtagcttggattatggccaagaggggcatccaagaaatcccttctagggaagtatttagcttcgaggacacgagtaagta 42578135  T
Q  459 aggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgt 527  Q
    ||||| | || ||  | |||||||| ||||  || |||||| ||||  | | |||||||||||||||||    
T  42578136 aggagtttgagtcggtgaggagtttccaactttgcttaccgtgcattgagagattgaaagcttccatgt 42578204  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 463
Target Start/End: Original strand, 13093762 - 13093821
Alignment:
Q  404 gcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaagtaaggag 463  Q
    ||||||||||||||||| |  ||||| |||||| |||| |||| ||||||||||||||||    
T  13093762 gcatccaagaaatcccttcgtggaaagtatttgtctttgaggacacgagtaagtaaggag 13093821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 21486013 - 21485931
Alignment:
Q  423 taggaaaatatttggcttttaggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcata 505  Q
    ||||||||||||||||||| || || ||||| |||| |||| ||| |||||| | ||||||| |||| || ||||| ||||||    
T  21486013 taggaaaatatttggctttcagaatgcgagtgagtagggagttgggatcatttaagagtttttaacattgcttaccaagcata 21485931  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 465
Target Start/End: Original strand, 4018378 - 4018499
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||||| | |||||||||||||||||||||| ||| |  ||||||||||||||||||| | ||||||||| ||||  | ||| |||||||||||||| |    
T  4018378 ataaggtctcgggaactccaaatgctcctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttga 4018477  T
Q  444 ggatacgagtaagtaaggagct 465  Q
    | || ||||| |||||||||||    
T  4018478 gaatgcgagtgagtaaggagct 4018499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 344 - 504
Target Start/End: Original strand, 8072297 - 8072457
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||||| ||| |||||||| ||||||||||| ||| || |||||||||||| |||||| ||  ||||||||||||  | ||| |||||||| ||||| |    
T  8072297 ataaggtcttgagaactccatatgctcctccaagtatagcttggattgtgacaaatattggctaccaagaaatcccgacgagggaaatatttagctttga 8072396  T
Q  444 ggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcat 504  Q
    | || ||||| |||||||||||||  ||  | |||||||| ||||  ||||||||||||||    
T  8072397 gaatgcgagtgagtaaggagctgggctctgtgaggagtttccaaccttgtttaccgagcat 8072457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 344 - 465
Target Start/End: Complemental strand, 24466117 - 24465996
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||||| | |||||||||||||||| ||||| ||| |  ||||||||||||||||||| | ||||||||| ||||  | ||| |||||||||||||| |    
T  24466117 ataaggtctcgggaactccaaatgcttctccaagtataacttggattgtgaccaatattggtatccaagaagtcccgtcgagggaaatatttggctttga 24466018  T
Q  444 ggatacgagtaagtaaggagct 465  Q
    | || ||||| |||||||||||    
T  24466017 gaatgcgagtgagtaaggagct 24465996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 26659453 - 26659402
Alignment:
Q  350 ttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatat 401  Q
    |||||||||||||| || ||||||||||||||  ||||||| ||||||||||    
T  26659453 ttttgggaactccatatactcctccatgtaaaacttggattatgaccaatat 26659402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 344 - 504
Target Start/End: Complemental strand, 21951282 - 21951122
Alignment:
Q  344 ataaggttttgggaactccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggctttta 443  Q
    ||||||| ||| |||||||| ||||||||||| ||| || |||||||||||| |||||| ||  ||||||||||||  | ||| |||||||| ||||| |    
T  21951282 ataaggtcttgagaactccatatgctcctccaagtatagcttggattgtgactaatattggctaccaagaaatcccgacgagggaaatatttagctttga 21951183  T
Q  444 ggatacgagtaagtaaggagctggaatcattcaggagttttcaacaatgtttaccgagcat 504  Q
    | || ||||| |||||||||||||  ||  | |||||||| ||||  ||||||||||||||    
T  21951182 gaatgcgagtgagtaaggagctgggctctgtgaggagtttccaaccttgtttaccgagcat 21951122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 588
Target Start/End: Complemental strand, 16862050 - 16861820
Alignment:
Q  358 actccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaagt 457  Q
    ||||||||  |||||||||||  || ||||||| ||||||| |  ||| |||||||||||||  | ||| |||||||||||||| |||| ||||||||||    
T  16862050 actccaaagactcctccatgtgtagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagt 16861951  T
Q  458 aaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaaccgagtccacctgaacttttgt 557  Q
    |||||  | || ||  ||| |||||| ||||  || ||||| |||||| | | |||||| |||||||  || |  |||||||| |||||   ||||||||    
T  16861950 aaggaatttgagtctgtcatgagtttccaactttgcttaccaagcatagaaagattgaatgcttccaaattgcgaaaaccgaggccaccaagacttttgt 16861851  T
Q  558 gcaaggtaaacttatcccatctcatccaatt 588  Q
    |||| || |  || |||||||||||||||||    
T  16861850 gcaaagtgagtttctcccatctcatccaatt 16861820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 358 - 588
Target Start/End: Original strand, 946 - 1176
Alignment:
Q  358 actccaaatgctcctccatgtaaagtttggattgtgaccaatatttgcatccaagaaatccctcctaggaaaatatttggcttttaggatacgagtaagt 457  Q
    ||||||||  |||||||||||| || ||||||| ||||||| |  ||| |||||||||||||  | ||| |||||||||||||| |||| ||||||||||    
T  946 actccaaagactcctccatgtatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagt 1045  T
Q  458 aaggagctggaatcattcaggagttttcaacaatgtttaccgagcataaataaattgaaagcttccatgtttcagaaaccgagtccacctgaacttttgt 557  Q
    |||||  | || ||  ||| |||||| ||||  || |||||||||||| | | |||||| |||||||  || |  ||||| || |||||   ||||||||    
T  1046 aaggaatttgagtctgtcatgagtttccaactttgcttaccgagcatagaaagattgaatgcttccaaattgcgaaaaccaaggccaccaagacttttgt 1145  T
Q  558 gcaaggtaaacttatcccatctcatccaatt 588  Q
    |||| || |  || |||||||||||||||||    
T  1146 gcaaagtgagtttctcccatctcatccaatt 1176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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