View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0468_low_10 (Length: 250)
Name: NF0468_low_10
Description: NF0468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0468_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31346131 - 31345903
Alignment:
| Q |
1 |
cataaaaatggttacgatatcattctccaaacccacatgatttagaagaaccggaaaaaggaataaagtggtcaagaaggtttgacatcctaaatgcctc |
100 |
Q |
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| T |
31346131 |
cataaaaatggttatgatatcattctccaaacccacatgatttagaagaaccggaaaaaggaataaagtggtcaagaaggtttgacatcctaaatgcctc |
31346032 |
T |
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| Q |
101 |
ttggtgaaaaa-------ttggaacacttcaatgaaacggaaatggaatcttggaaaaactgaattgttgcattaaacgcctcttgatgnnnnnnnntgt |
193 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31346031 |
ttggtgaaaaattgcaagttgcaacacttcaatgaaacggaaatggaatcttggaaaaactgaattgttgcattaaacgcctcttgatgaaaaaaaatgt |
31345932 |
T |
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| Q |
194 |
ttcataaaagtatgaaagaaaagagcatt |
222 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
31345931 |
ttcataaaagtataaaagaaaagagcatt |
31345903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 31356824 - 31356643
Alignment:
| Q |
1 |
cataaaaatggttacgatatcattctccaaacccacatgatttagaagaaccggaaaaaggaataaagtggtcaagaaggtttgacatcctaaatgcctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31356824 |
cataaaaatggttacgatatcattctccaaacccacatgatttagaagaaccggaaaaatgaataaagtggtcaagaaggtttgacatcctaaatgcctc |
31356725 |
T |
|
| Q |
101 |
ttggtgaaaaattggaacacttcaatgaaacggaaatggaatcttggaaaaactgaattgttgcattaaacgcctcttgatg |
182 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
31356724 |
ttggtgaaaaattgcaacacttcaatgaaacggaaatgaaaacttggaaaaactgaattgttgcattaaacgcctctcgatg |
31356643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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