View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0468_low_12 (Length: 236)
Name: NF0468_low_12
Description: NF0468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0468_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37253822 - 37253712
Alignment:
| Q |
1 |
atagattgatgtacgatgtgctgaggtatgacctgtgctgtataggttggtgggtgctgttagcagcttctgtttgctcctgcagggtctgttgtggaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37253822 |
atagattgatgtacgatgtgctgaggtatgacctgtgctgtataggttggtgggtgctgttagcagcttctgtttgctcctgcagggtctgctgtggaca |
37253723 |
T |
|
| Q |
101 |
gcccaggtcta |
111 |
Q |
| |
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||||||||||| |
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| T |
37253722 |
gcccaggtcta |
37253712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 45091348 - 45091458
Alignment:
| Q |
1 |
atagattgatgtacgatgtgctgaggtatgacctgtgctgtataggttggtgggtgctgttagcagcttctgtttgctcctgcagggtctgttgtggaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45091348 |
atagattgatgtacgatgtgctgaggtatgacctgtgctgtataggttggtggatgctgttagcagcttctgtttgctcctgcagggtctgctgtggaca |
45091447 |
T |
|
| Q |
101 |
gcccaggtcta |
111 |
Q |
| |
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||||||||||| |
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| T |
45091448 |
gcccaggtcta |
45091458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11073344 - 11073237
Alignment:
| Q |
1 |
atagattgatgtacgatgtgctgaggtatgacctgtgctgtataggttggtgggtgctgttagcagcttctgtttgctcctgcagggtctgttgtggaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11073344 |
atagattgatgtacgatgtgctgaggtatgacctgtgctgtataggttggtgggtgctgttagcagcttctgtttgctcctgcagggt---ttgtggaca |
11073248 |
T |
|
| Q |
101 |
gcccaggtcta |
111 |
Q |
| |
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||||||||||| |
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|
| T |
11073247 |
gcccaggtcta |
11073237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 41999432 - 41999466
Alignment:
| Q |
109 |
ctaacacactccagtttactgtccaaagtgcttac |
143 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
41999432 |
ctaacactctccagtttactgtccaaagtgcttac |
41999466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 45092588 - 45092622
Alignment:
| Q |
109 |
ctaacacactccagtttactgtccaaagtgcttac |
143 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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|
| T |
45092588 |
ctaacacactacagtttactgtccaaagtgcttac |
45092622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 8034860 - 8034894
Alignment:
| Q |
109 |
ctaacacactccagtttactgtccaaagtgcttac |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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|
| T |
8034860 |
ctaacactctccagtttactgtccaaagtgcttac |
8034894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 28946329 - 28946295
Alignment:
| Q |
109 |
ctaacacactccagtttactgtccaaagtgcttac |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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|
| T |
28946329 |
ctaacactctccagtttactgtccaaagtgcttac |
28946295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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