View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0468_low_13 (Length: 233)
Name: NF0468_low_13
Description: NF0468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0468_low_13 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 53415601 - 53415806
Alignment:
| Q |
1 |
catgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagc |
100 |
Q |
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| T |
53415601 |
catgcaaacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagataagaaaagc |
53415700 |
T |
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| Q |
101 |
cacctctaacgagttcggatgggaagaacaaaaagaacttgaaactgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgt |
200 |
Q |
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| T |
53415701 |
cacctctaacgagttcggatgggaagaacaaaaagaacttgaaactgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgt |
53415800 |
T |
|
| Q |
201 |
aatgtg |
206 |
Q |
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|||||| |
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| T |
53415801 |
aatgtg |
53415806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 53411883 - 53412072
Alignment:
| Q |
8 |
acatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctct |
107 |
Q |
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| T |
53411883 |
acatatacttggattttacttgctttttaattgtaggcttctttgagggagctgaaaatagatttgaaaagggcaagaaaagaaaatt-----cacctct |
53411977 |
T |
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| Q |
108 |
aacgagttcggatgggaagaacaaaaagaacttgaaac-tgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgtaatg |
204 |
Q |
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| T |
53411978 |
aacgagttcggacgggaagaa---aaggaacttgaatcctgaagcgtaatatacagcttccttagtatctttacacattataattatcaagtataatg |
53412072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 53366930 - 53366748
Alignment:
| Q |
7 |
aacatatacttggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctc |
106 |
Q |
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| T |
53366930 |
aacatattcttggatctgacttgctttttaattttaggcttttctgagggagctgaaaatagatttgaaaaaggcaagaaaagaaaagt-----cacctc |
53366836 |
T |
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| Q |
107 |
taacgagttcggatgggaagaacaaaaagaacttgaa-actgaagcgtaataaacagcttccttaacatctttggacattataattatcaa |
196 |
Q |
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| T |
53366835 |
taacgagttcggacgggaag---aaaaggaacttgaatcctgaagcgtaatatacaccttccttagtatctttacacattataattatcaa |
53366748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 53318398 - 53318534
Alignment:
| Q |
30 |
ctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctctaacgagttcggatgggaagaac |
129 |
Q |
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|||||||||||||||| ||| |||| |||||||||||||||| |||||||| || |||| ||||||||||||||| | ||||||| ||||| || |
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| T |
53318398 |
ctttttaattgtaggcaaattagaaggagctgaaaatagatttagaaagggc-----aaaaaaacaaaagccacctctaaagtgttcggacaggaaggac |
53318492 |
T |
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| Q |
130 |
aaaaagaacttgaa-actgaagcgtaataaacagcttcctta |
170 |
Q |
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| T |
53318493 |
aggaggaactttaatcctgaagcgtaatatacagcttcctta |
53318534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 2844 - 2793
Alignment:
| Q |
38 |
ttgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaag |
89 |
Q |
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| T |
2844 |
ttgtaggctgatctgaaggagctgaaagtagatttggacagggcaaggaaag |
2793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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