View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0468_low_9 (Length: 262)
Name: NF0468_low_9
Description: NF0468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0468_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33902308 - 33902402
Alignment:
| Q |
1 |
aggcttaaaatattgcataaaatttggaaactcgtatacacatgcaaactataaactatatactgcacctctaagaaaacatatattattaattt |
95 |
Q |
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| T |
33902308 |
aggcttaaaatattgcataaaatttggaaactcgtatacacatgcaaactataaactatatactgcacctctaagaaaacatatattattaattt |
33902402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 33902436 - 33902539
Alignment:
| Q |
129 |
catcataattacaagcatttgtggggttagagaactctttatatttcaattaataaaaaatttgcttataaaaaacaatataagatattgcatataccaa |
228 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33902436 |
catcataattacaagcatttgtggg-ttagagaactctttatatttcaattaataaaaaatttgcttataaaaaacaatataagatattgcatatatcaa |
33902534 |
T |
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| Q |
229 |
cttat |
233 |
Q |
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||||| |
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| T |
33902535 |
cttat |
33902539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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