View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0469_low_1 (Length: 770)
Name: NF0469_low_1
Description: NF0469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0469_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 286 - 694
Target Start/End: Complemental strand, 27844457 - 27844049
Alignment:
| Q |
286 |
tatttctaaacagccatgaggatgagtatacaaaaatgaaattgatgaaatagaatgatcctttcaaagacactaaaaaggagtgcatgatctctacggt |
385 |
Q |
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| T |
27844457 |
tatttctatatagctatgaggatgagtatacaaaaatgaaattgatgaaatagaatgatcctttcaaagagactaaaaaggagtgcatgatctctacggt |
27844358 |
T |
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| Q |
386 |
ggaatttcagaaagcctacgatttggtaagttggagtttttgggattacatgctttaaagattcaacttcaatgaaaaatgaagaggttggatgagggct |
485 |
Q |
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| T |
27844357 |
ggaatttcagaaagcctacgatttggtaagttggagtttttgggattacatgctttaaagattcaacttcgatgaaaaatgaagaggttggatgagggct |
27844258 |
T |
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| Q |
486 |
tctgtattttcggataatttgttggtattggcgaatgggattcccatggaagagatgaaaattagtagcgggcttatgcaaggtgatctgttagcaccct |
585 |
Q |
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| T |
27844257 |
tctgtattttcggataatttgttggtattggcgaatgggattcccatggaagagatgaaaattagtagcgggcttatgcaaggtgatctgttagtaccct |
27844158 |
T |
|
| Q |
586 |
tttgttttattggtggaagtctggaaaagaagtcaggggtttattggatattgaagtgcagttgggatattttatgggtatcatatacatgactcaaagg |
685 |
Q |
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| T |
27844157 |
tttgttttattggtggaagtctggaagagaggtcaggggtttattggatattgtggtgcagttgggatattttatgggtatcagatacatgactcaaagg |
27844058 |
T |
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| Q |
686 |
tattggtga |
694 |
Q |
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| T |
27844057 |
tattggtga |
27844049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 27844735 - 27844572
Alignment:
| Q |
3 |
atggattaattattagaggtggaaattgagttcatcgatccaatcatttattgatctaatccatcaaatttgaaaaataaataatgaattttcatggaaa |
102 |
Q |
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| T |
27844735 |
atggattaattattagaggtggaaattgagttca---at--aatcgatcatcgatccaatccatcaaatttgaaaaataaataatgaattttcatgaaaa |
27844641 |
T |
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| Q |
103 |
ctcaacaaaatgcattaaaatacaaatgcaaattatttaccaaacaagatatgccgcaaatagaaagat |
171 |
Q |
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| T |
27844640 |
ctcaacaaaatgcattaaaatacaaatgtaaattatttaccaaacaagatatgccgcaaatagaaagat |
27844572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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