View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0469_low_11 (Length: 271)
Name: NF0469_low_11
Description: NF0469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0469_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 38892830 - 38893092
Alignment:
| Q |
1 |
cattttagtgttattaattacgctcacatttgaaccaattcaaaataaagatgactcatttaatcaattcttattcttgggtccactttttgcagggaag |
100 |
Q |
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| T |
38892830 |
cattttagtttgattaattacgctcacatttgaaccaattcaaaataaagatgactcatttaatcaattcttattcttggttccactttttgcagggaag |
38892929 |
T |
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| Q |
101 |
gcaagaagagagaaacagaaggcaactagtgactttagattgaaaagtaatggcaaaggagcaaattcaggtgctaaatgcacttgatgtggcgaaaacg |
200 |
Q |
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| T |
38892930 |
gcaagaagagagaaacagaaggaaactagtgactttagattgaaaagtaatggcaaaggagcaaattcaggtgctaaatgcacttgatgtggcgaaaacg |
38893029 |
T |
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| Q |
201 |
caatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatgat |
263 |
Q |
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| T |
38893030 |
caatggtatcacttcacagcaatcatcattgctggaatgggattctttactgatgcctatgat |
38893092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 38883777 - 38883900
Alignment:
| Q |
140 |
ttgaaaagtaatggcaaaggagcaaattcaggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatg |
239 |
Q |
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| T |
38883777 |
ttgaatagtcatggctaaggatcaaattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatg |
38883876 |
T |
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| Q |
240 |
ggattctttacggatgcctatgat |
263 |
Q |
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| T |
38883877 |
ggattctttacagatgcctatgat |
38883900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 30621081 - 30620993
Alignment:
| Q |
168 |
caggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgc |
256 |
Q |
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| T |
30621081 |
caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgc |
30620993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 16223190 - 16223282
Alignment:
| Q |
171 |
gtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatgat |
263 |
Q |
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| T |
16223190 |
gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgat |
16223282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 16183800 - 16183892
Alignment:
| Q |
171 |
gtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatgat |
263 |
Q |
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| T |
16183800 |
gtgcttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgat |
16183892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 33108900 - 33108992
Alignment:
| Q |
171 |
gtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatgat |
263 |
Q |
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| T |
33108900 |
gtgcttaatgcactcgatgtggcgaagacacaaatgtaccatttcacagcaattgtgattgctggaatgggttttttcactgatgcctatgat |
33108992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 37316274 - 37316186
Alignment:
| Q |
174 |
ctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcatagctggaatgggattctttacggatgcctatga |
262 |
Q |
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|||| ||| ||||||| || ||||| |||||||| || |||||||| ||||| || ||||| ||||||||||| || ||||| ||||| |
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| T |
37316274 |
ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatga |
37316186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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