View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0469_low_17 (Length: 240)

Name: NF0469_low_17
Description: NF0469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0469_low_17
NF0469_low_17
[»] chr4 (17 HSPs)
chr4 (99-206)||(10184867-10184974)
chr4 (126-194)||(43189852-43189920)
chr4 (129-194)||(49495557-49495622)
chr4 (122-184)||(45577790-45577852)
chr4 (122-185)||(52673752-52673815)
chr4 (126-194)||(37695631-37695699)
chr4 (126-185)||(31445974-31446033)
chr4 (148-185)||(42034484-42034521)
chr4 (122-194)||(7555047-7555119)
chr4 (126-194)||(41720771-41720839)
chr4 (126-184)||(16320449-16320507)
chr4 (146-196)||(22318472-22318522)
chr4 (145-194)||(9435345-9435394)
chr4 (145-194)||(44324432-44324481)
chr4 (152-188)||(37859338-37859374)
chr4 (126-194)||(47642581-47642649)
chr4 (126-194)||(50178583-50178651)
[»] chr3 (14 HSPs)
chr3 (122-185)||(42547463-42547526)
chr3 (124-194)||(42035769-42035839)
chr3 (145-194)||(28625010-28625059)
chr3 (149-194)||(49107135-49107180)
chr3 (126-194)||(10747143-10747211)
chr3 (127-195)||(22484833-22484901)
chr3 (126-194)||(31883113-31883181)
chr3 (146-194)||(44000207-44000255)
chr3 (126-194)||(51925299-51925367)
chr3 (132-194)||(5442222-5442285)
chr3 (146-193)||(39079285-39079332)
chr3 (127-194)||(51813319-51813386)
chr3 (146-196)||(3867738-3867788)
chr3 (148-196)||(8067146-8067194)
[»] chr6 (11 HSPs)
chr6 (126-194)||(31870236-31870304)
chr6 (126-196)||(27824784-27824855)
chr6 (126-196)||(18597292-18597362)
chr6 (129-194)||(35004264-35004329)
chr6 (122-194)||(1004558-1004630)
chr6 (152-196)||(29203060-29203104)
chr6 (137-183)||(4064096-4064142)
chr6 (147-205)||(13412644-13412702)
chr6 (147-184)||(7396269-7396306)
chr6 (126-194)||(14808136-14808204)
chr6 (146-194)||(32614074-32614122)
[»] chr7 (16 HSPs)
chr7 (146-196)||(29455942-29455992)
chr7 (126-196)||(48445450-48445520)
chr7 (126-194)||(1363566-1363634)
chr7 (126-194)||(9913454-9913522)
chr7 (126-194)||(9927142-9927210)
chr7 (145-188)||(15035357-15035400)
chr7 (126-196)||(14608488-14608558)
chr7 (126-196)||(34295500-34295570)
chr7 (147-196)||(41903650-41903699)
chr7 (151-194)||(3359939-3359982)
chr7 (145-196)||(29372875-29372926)
chr7 (145-194)||(8083830-8083879)
chr7 (127-196)||(22724128-22724197)
chr7 (152-196)||(329425-329469)
chr7 (122-174)||(2048877-2048929)
chr7 (126-194)||(43368130-43368198)
[»] chr2 (6 HSPs)
chr2 (126-196)||(6896093-6896163)
chr2 (126-194)||(32766602-32766670)
chr2 (146-182)||(35170323-35170359)
chr2 (126-188)||(27462903-27462965)
chr2 (156-196)||(30712812-30712852)
chr2 (146-186)||(42202032-42202072)
[»] chr1 (18 HSPs)
chr1 (124-192)||(32785366-32785434)
chr1 (122-186)||(33937089-33937153)
chr1 (146-196)||(15540060-15540110)
chr1 (126-194)||(38663066-38663134)
chr1 (126-185)||(504572-504631)
chr1 (122-196)||(13994244-13994319)
chr1 (132-191)||(24173141-24173200)
chr1 (145-187)||(34283997-34284039)
chr1 (152-190)||(39739013-39739051)
chr1 (127-193)||(49799312-49799378)
chr1 (147-196)||(2761725-2761774)
chr1 (145-194)||(15324110-15324159)
chr1 (126-194)||(44738213-44738282)
chr1 (145-194)||(47093014-47093063)
chr1 (128-196)||(6144156-6144224)
chr1 (96-140)||(26894989-26895033)
chr1 (150-194)||(43678077-43678121)
chr1 (126-194)||(50304585-50304653)
[»] chr8 (8 HSPs)
chr8 (145-194)||(9624181-9624231)
chr8 (126-196)||(29611165-29611235)
chr8 (126-194)||(41548543-41548611)
chr8 (159-192)||(54129-54162)
chr8 (127-196)||(16485919-16485988)
chr8 (127-196)||(35225588-35225657)
chr8 (126-194)||(10466989-10467057)
chr8 (126-194)||(37618504-37618572)
[»] scaffold0650 (1 HSPs)
scaffold0650 (123-196)||(1744-1817)
[»] chr5 (4 HSPs)
chr5 (131-196)||(31644376-31644441)
chr5 (126-191)||(42013441-42013506)
chr5 (126-194)||(4689801-4689869)
chr5 (145-177)||(29788576-29788608)
[»] scaffold0062 (1 HSPs)
scaffold0062 (152-196)||(3729-3773)
[»] scaffold0054 (1 HSPs)
scaffold0054 (148-177)||(19854-19883)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 10184974 - 10184867
Alignment:
Q  99 atctactaataggtaagtaccgcacaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatggt 198  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  10184974 atctactagtaggtaagtactgcacaaaacaacacaatacaaggtggaacagcacatgacaaacttttatggtattgaacaattttttgtcttatatgat 10184875  T
Q  199 attttgta 206  Q
    ||||||||    
T  10184874 attttgta 10184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 43189920 - 43189852
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  || |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43189920 aacaacacaatacaaggaagagcaacacatgataaacttttatggtattgaataattttttgtcttata 43189852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 49495557 - 49495622
Alignment:
Q  129 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  49495557 aacacaatataaggtagaacaacacataacaaacttttatgatattgaacaattttttatcttata 49495622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 45577852 - 45577790
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 184  Q
    |||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  45577852 acaaaacaacacaacataaggttgaacaacacatgacaaagttttatggtattgaataatttt 45577790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 52673752 - 52673815
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 185  Q
    |||||||||||||| ||||||  ||||  ||||||||||||||||||||||||||| |||||||    
T  52673752 acaaaacaacacaacacaaggcagaactgcacatgacaaacttttatggtattgaataattttt 52673815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 37695699 - 37695631
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  37695699 aacaacacaatacaagggagaacagcacaagacaaatttttatggcattgaataattttttgttttata 37695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 31446033 - 31445974
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 185  Q
    |||||||||| |||| || ||| ||||||||||||||||||||||||||| | |||||||    
T  31446033 aacaacacaacacaaagtagaaaaacacatgacaaacttttatggtattggataattttt 31445974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 42034521 - 42034484
Alignment:
Q  148 caacacatgacaaacttttatggtattgaacaattttt 185  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42034521 caacacatgacaaacttttatggtattgaataattttt 42034484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 7555119 - 7555047
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||| |||||   ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  7555119 acaaaacaacacaacacaagacagaacatcacacgacaaatttttatggcattgaataattttttgttttata 7555047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 41720771 - 41720839
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||| || |||| || ||||||||||||||||||||| ||| ||||| | ||||||| ||||||||    
T  41720771 aacaacataacacaaagtagaacaacacatgacaaactttaatgatattgtataatttttagtcttata 41720839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 16320449 - 16320507
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 184  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||| |||||| ||||||    
T  16320449 aacaacacaatagaagggagaacaacacaagacaaatttttatggcattgaataatttt 16320507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 22318522 - 22318472
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||||||| ||||||| ||||||| ||||| |||| |||||||    
T  22318522 aacaacacatgacaaatttttatgatattgaataatttcttgttttatatg 22318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 9435345 - 9435394
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  9435345 gaacaacacacgacaaacttttatgatattgaattatttttggtcttata 9435394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 44324481 - 44324432
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  44324481 gaacagcacatgacaaatttttatggcattgaataattttttgttttata 44324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 37859374 - 37859338
Alignment:
Q  152 acatgacaaacttttatggtattgaacaattttttgt 188  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  37859374 acatgacaaacttgtattgtattgaacaattttttgt 37859338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 47642649 - 47642581
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| |||| || ||| |||||||  |||||| |||||||||| |||||    
T  47642649 aacaacacaatacaagggagaacagcacaggataaatttttatgacattgaataattttttgttttata 47642581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 50178651 - 50178583
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50178651 aacatcacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 50178583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 42547526 - 42547463
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 185  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  42547526 acaaaacaacacgatacaaggtagaacaacacatgacaaacttttatgatattgaataattttt 42547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 42035839 - 42035769
Alignment:
Q  124 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||  | ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42035839 aaaacaacacagaataaggtagaacaacacttgacaaacttttatggtattgaacaattttttctcttata 42035769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 28625059 - 28625010
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28625059 gaacaacacaagacaaacttttatggtattgaataattttttgtcttata 28625010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 49107135 - 49107180
Alignment:
Q  149 aacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  49107135 aacacatgacaaacttatatgatatcgaacaattttttgtcttata 49107180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 10747143 - 10747211
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  10747143 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttata 10747211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 22484901 - 22484833
Alignment:
Q  127 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatat 195  Q
    ||||||||| | ||||| ||||| |||| |||||| ||||||||||||||| |||||| ||| ||||||    
T  22484901 acaacacaacataaggtagaacagcacaagacaaatttttatggtattgaataattttctgtattatat 22484833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 31883181 - 31883113
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||| ||||||||||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  31883181 aacagcacaatacaagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 31883113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 44000207 - 44000255
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||||||    
T  44000207 aacaatacaagacaaacttttatggtattgaataatttttggtcttata 44000255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 51925367 - 51925299
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||| ||||| ||||||  ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  51925367 aacagcacaacacaaggcagaacagcacatgacaaatttttatggcattgaataattttttgttttata 51925299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 5442222 - 5442285
Alignment:
Q  132 acaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||||||  ||||||||||||||||  |||||||| |||||| |||||||||| |||||    
T  5442222 acaatacaaggtataacaacacatgacaaattttttatggcattgaataattttttgttttata 5442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 39079332 - 39079285
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttat 193  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||||    
T  39079332 aacaacacatgacaaacttttattgtattggataattttttatcttat 39079285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 51813319 - 51813386
Alignment:
Q  127 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||| ||||||  ||||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  51813319 acaacacaacacaaggcagaacaacacatgataaacttttatagtccttgacaattttttgtcttata 51813386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 3867788 - 3867738
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||||||  ||||||||||||||| ||||| |||| |||||||    
T  3867788 aacaacacatgacaagtttttatggtattgaataatttcttgttttatatg 3867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 8067194 - 8067146
Alignment:
Q  148 caacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  8067194 caacacatgacatacttttatggtattgaatgatttttgatcttatatg 8067146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 31870304 - 31870236
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  31870304 aacaacacaatataagggagaacaacacatgacaaatttttatggcattgaataattttttgttttata 31870236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 27824855 - 27824784
Alignment:
Q  126 aacaacacaatacaaggt-ggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||  |||||||||    
T  27824855 aacatcacaacacaaggttggaacaatacatgacaaacttttatggtattgaataatttttgatcttatatg 27824784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 18597362 - 18597292
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| || |||| ||||||||||| | ||| ||||||||||||||| |||||||||| |||||||    
T  18597362 aacaacacaacactaggtagaacaacacataataaatttttatggtattgaataattttttgttttatatg 18597292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 35004329 - 35004264
Alignment:
Q  129 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||||||||  ||||||||||| ||||||||||||| ||||||| | ||||| || |||||    
T  35004329 aacacaatacaaggcagaacaacacataacaaacttttatgatattgaatagtttttggtattata 35004264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 1004630 - 1004558
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||| | |||   ||||| |||||||||||||| ||  |||||||||| ||||||||||||||    
T  1004630 acaaaacaacacaacataagaaagaacatcacatgacaaacttataatgtattgaacatttttttgtcttata 1004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 29203104 - 29203060
Alignment:
Q  152 acatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||    
T  29203104 acatgacaaatttttatgatattgaacaattatttgtcttatatg 29203060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 4064142 - 4064096
Alignment:
Q  137 acaaggtggaacaacacatgacaaacttttatggtattgaacaattt 183  Q
    ||||||| |||||| |||||||||||||||||| ||||||| |||||    
T  4064142 acaaggtagaacaatacatgacaaacttttatgatattgaataattt 4064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 13412644 - 13412702
Alignment:
Q  147 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatggtattttgt 205  Q
    ||||||||||||||| |||||| |||||||| |||||||  ||||||||| | ||||||    
T  13412644 acaacacatgacaaatttttatagtattgaataatttttcatcttatatgattttttgt 13412702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 7396306 - 7396269
Alignment:
Q  147 acaacacatgacaaacttttatggtattgaacaatttt 184  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  7396306 acaacacatgacaaatttttatggtattgaataatttt 7396269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 14808204 - 14808136
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||| | |||| |||||| |||||||| |||||| ||||||| || |||||    
T  14808204 aacaacacaatacaagggagaatagcacaggacaaatttttatggaattgaataatttttagttttata 14808136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 32614122 - 32614074
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||| |||||||||||||||||||||  | ||||||| ||||||||    
T  32614122 aacaacatatgacaaacttttatggtattatataatttttggtcttata 32614074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 29455992 - 29455942
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  29455992 aacaacacatgacaaacttttatggtattgaataatatttggtcttatatg 29455942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 48445450 - 48445520
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  48445450 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 48445520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 1363566 - 1363634
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||  | ||||| ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  1363566 aacaacacatcagaaggtagaacaacacatgacaaatttttatggcattgaataattttttgttttata 1363634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 9913454 - 9913522
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9913454 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 9927142 - 9927210
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9927142 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9927210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 15035400 - 15035357
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgt 188  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  15035400 gaacaacacatgacaaatttttatggtattgaataattttttgt 15035357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 14608558 - 14608488
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| ||||||   ||||||| | ||||||||||||||||||| ||||||||||  |||||||||    
T  14608558 aacaacacaacacaaggcataacaacataggacaaacttttatggtattaaacaatttttgatcttatatg 14608488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 34295570 - 34295500
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||||    
T  34295570 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttatatg 34295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 41903699 - 41903650
Alignment:
Q  147 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||||    
T  41903699 acaacacatcataaacttttatggtcttgaacaattttttgttttatatg 41903650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 3359982 - 3359939
Alignment:
Q  151 cacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3359982 cacatgataaacttttatgatattgaataattttttgtcttata 3359939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 29372926 - 29372875
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||| ||| ||||||||||||||||||| || ||||||| ||||||||||    
T  29372926 gaacaatacaagacaaacttttatggtattaaataatttttggtcttatatg 29372875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 8083879 - 8083830
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||| || |||||||||| |||||||| | ||||||||||||||||    
T  8083879 gaacaacatataacaaacttttgtggtattgcataattttttgtcttata 8083830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 22724197 - 22724128
Alignment:
Q  127 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||||| | ||||  |||||||||| || ||| ||||||||||||||| |||||| ||| |||||||    
T  22724197 acaacacaacataaggcagaacaacacaagataaatttttatggtattgaataattttctgtattatatg 22724128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 329425 - 329469
Alignment:
Q  152 acatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| ||||||||||||||| ||||| |||| |||||||    
T  329425 acatgacaaatttttatggtattgaataatttcttgttttatatg 329469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 2048877 - 2048929
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtatt 174  Q
    |||||||||||||| ||||||  ||||||||||||| |||||  |||||||||    
T  2048877 acaaaacaacacaacacaaggcagaacaacacatgataaactcgtatggtatt 2048929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 43368130 - 43368198
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||| ||||||||||||  ||||| ||||||||||| ||||||   |||||| |||||||||| |||||    
T  43368130 aacagcacaatacaagggagaacagcacatgacaaatttttatcacattgaataattttttgttttata 43368198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 6896093 - 6896163
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  6896093 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 6896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 32766670 - 32766602
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||||| |||||  |||||||||| |||||| |||||||| |||||| |||||||||| |||||    
T  32766670 aacaacacaatgcaagggagaacaacacaggacaaatttttatggcattgaataattttttgttttata 32766602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 35170359 - 35170323
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaatt 182  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35170359 aacaacacatgacaaacttttatggtgttgaacaatt 35170323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 27462965 - 27462903
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgt 188  Q
    |||| ||||| ||||||| ||||||||||||||||| || ||||  |||||| ||||||||||    
T  27462965 aacagcacaacacaaggtagaacaacacatgacaaatttatatgacattgaataattttttgt 27462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 30712812 - 30712852
Alignment:
Q  156 gacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  30712812 gacaaatttttatggtattgaataattttttgttttatatg 30712852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 42202032 - 42202072
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaatttttt 186  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  42202032 aacaacacttgacaaccttttatggtattgaataatttttt 42202072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 32785434 - 32785366
Alignment:
Q  124 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctta 192  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  32785434 aaaacaatataatacaaggcagaacaacacaagacaaacttttatggtaatgaataatttttggtctta 32785366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 33937153 - 33937089
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttttt 186  Q
    |||||||| |||| || ||||| |||||||||| |||||||||||||||||||  ||||||||||    
T  33937153 acaaaacatcacactataaggtagaacaacacaagacaaacttttatggtattagacaatttttt 33937089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 15540110 - 15540060
Alignment:
Q  146 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  15540110 aacaacacatgacaagtttttatggtattgaataattttttgttttatatg 15540060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 38663066 - 38663134
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  38663066 aacaacacaatataagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 38663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 504631 - 504572
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 185  Q
    |||||||||| |||| || ||| |||||||| |||| ||||||||||||| |||||||||    
T  504631 aacaacacaacacaaagtagaataacacatgtcaaatttttatggtattggacaattttt 504572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 13994319 - 13994244
Alignment:
Q  122 acaaaacaacacaatacaaggtggaacaacacatgacaaacttt-tatggtattgaacaattttttgtcttatatg 196  Q
    |||| ||||||||||||||||  |||||||||| |||||| ||| |||| ||||||| |||||| ||| |||||||    
T  13994319 acaacacaacacaatacaaggcagaacaacacaagacaaattttgtatgatattgaataattttatgttttatatg 13994244  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 24173200 - 24173141
Alignment:
Q  132 acaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 191  Q
    |||||||||  | ||||||||||||||||||||||| ||||||  |||| ||||||||||    
T  24173200 acaatacaaaatagaacaacacatgacaaacttttaaggtatttgacaactttttgtctt 24173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 34284039 - 34283997
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttg 187  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  34284039 gaacaacacaagacaaacttttatggtattgaataagtttttg 34283997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 39739051 - 39739013
Alignment:
Q  152 acatgacaaacttttatggtattgaacaattttttgtct 190  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  39739051 acatgataaatttttatggtattgaacaattttttgtct 39739013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 49799312 - 49799378
Alignment:
Q  127 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttat 193  Q
    ||||| ||||||||| | ||||| |||| |||||||||||||| ||||||| ||| ||| |||||||    
T  49799312 acaactcaatacaagctagaacaccacaagacaaacttttatgatattgaataatatttggtcttat 49799378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 2761774 - 2761725
Alignment:
Q  147 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||||||||| |||||||| |||||||| ||||||| || |||||||    
T  2761774 acaacacatgacagacttttatagtattgaataatttttggttttatatg 2761725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 15324110 - 15324159
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||||||| || ||||||||||| | || ||||||||||||||||    
T  15324110 gaacaacacatgaaaagcttttatggtaataaataattttttgtcttata 15324159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 44738282 - 44738213
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 194  Q
    ||||| |||| ||||||| |||||||||||||||||  |||||||| |||||  |||||||||| |||||    
T  44738282 aacaatacaacacaaggtagaacaacacatgacaaattttttatggcattgagtaattttttgttttata 44738213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 47093063 - 47093014
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| ||||||    
T  47093063 gaacaacacatgacaaatttttataatattgaataattttttgccttata 47093014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 6144224 - 6144156
Alignment:
Q  128 caacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||| | ||||  ||||| |||| |||||| ||||||||||||||| |||||| ||| |||||||    
T  6144224 caacacaacataaggcagaacatcacaagacaaatttttatggtattgaataattttctgttttatatg 6144156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 26894989 - 26895033
Alignment:
Q  96 ttgatctactaataggtaagtaccgcacaaaacaacacaatacaa 140  Q
    ||||||| |||| |||||||||||| |||||||||||||| ||||    
T  26894989 ttgatctgctaaaaggtaagtaccgaacaaaacaacacaagacaa 26895033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 43678121 - 43678077
Alignment:
Q  150 acacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||    
T  43678121 acacataacaagcctttatggtattgtacaattttttgtcttata 43678077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 50304585 - 50304653
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50304585 aacagcacaatacaagggagaacagcacaggacaaatttttatgacattgaataattttttgttttata 50304653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 9624181 - 9624231
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaacaa-ttttttgtcttata 194  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  9624181 gaacaacacatgacaaatttttatggtattgaataatttttttgtcttata 9624231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 29611235 - 29611165
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||| ||||||   ||||||||| |||||| ||||||||||||||| ||||| |||| |||||||    
T  29611235 aacaacacaacacaaggcataacaacacaggacaaatttttatggtattgaataatttcttgttttatatg 29611165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 41548543 - 41548611
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  41548543 aacaacacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 41548611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 54129 - 54162
Alignment:
Q  159 aaacttttatggtattgaacaattttttgtctta 192  Q
    ||||||||||||||||||| ||||||||||||||    
T  54129 aaacttttatggtattgaataattttttgtctta 54162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 16485988 - 16485919
Alignment:
Q  127 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||||||| ||||  ||||| ||||  ||||| ||||||||||||||| |||||| ||| |||||||    
T  16485988 acaacacaatataaggcagaacagcacaaaacaaatttttatggtattgaataattttctgtattatatg 16485919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 35225588 - 35225657
Alignment:
Q  127 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||||| |||||   |||||||||| |||||| ||||||||||||||| |||||  ||| |||||||    
T  35225588 acaacacaacacaagacagaacaacacaagacaaatttttatggtattgaataatttcctgttttatatg 35225657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 10466989 - 10467057
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  || ||| |||||||||| |||||    
T  10466989 aacaacacaatacaagggagaacagcacaggacaaatttttatgacatagaataattttttgttttata 10467057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 37618572 - 37618504
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||| ||||| ||||||  ||||| |||||||||||  ||||||| |||||| |||||||||| |||||    
T  37618572 aacagcacaacacaaggcagaacagcacatgacaaatgtttatggcattgaataattttttgttttata 37618504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 1817 - 1744
Alignment:
Q  123 caaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||| ||||| |||||   ||||||||||  ||||| ||||||||||||||| |||||||||| |||||||    
T  1817 caaaacagcacaacacaagagagaacaacacagaacaaatttttatggtattgaataattttttgttttatatg 1744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 31644376 - 31644441
Alignment:
Q  131 cacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    ||||||||||||| |||||||||| |||||| |||||||  |||||| |||||| ||| |||||||    
T  31644376 cacaatacaaggtagaacaacacaagacaaatttttatgacattgaataattttatgttttatatg 31644441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 42013441 - 42013506
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 191  Q
    |||||||||||| || || |||||| | |||| ||||||||||| ||||||||||||||| |||||    
T  42013441 aacaacacaataaaaagtagaacaatagatgataaacttttatgatattgaacaatttttggtctt 42013506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 4689869 - 4689801
Alignment:
Q  126 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 194  Q
    |||||||||| | ||||  ||||||||||||||||| |||||||  |||||| |||||||||| |||||    
T  4689869 aacaacacaacataaggcagaacaacacatgacaaatttttatgacattgaataattttttgttttata 4689801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 29788608 - 29788576
Alignment:
Q  145 gaacaacacatgacaaacttttatggtattgaa 177  Q
    ||||||||||||| |||||||||||||||||||    
T  29788608 gaacaacacatgataaacttttatggtattgaa 29788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 3773 - 3729
Alignment:
Q  152 acatgacaaacttttatggtattgaacaattttttgtcttatatg 196  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||    
T  3773 acatgacaaacttttatgatattgaataattttttatcttatatg 3729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 19854 - 19883
Alignment:
Q  148 caacacatgacaaacttttatggtattgaa 177  Q
    ||||||||||||||||||||||||||||||    
T  19854 caacacatgacaaacttttatggtattgaa 19883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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