View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0469_low_6 (Length: 311)
Name: NF0469_low_6
Description: NF0469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0469_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 1230045 - 1229776
Alignment:
| Q |
29 |
atcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatcaacctctccatcgaagttgttgtattaat |
128 |
Q |
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| T |
1230045 |
atcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatcaatctctccatcgaagttgttgtattaat |
1229946 |
T |
|
| Q |
129 |
ttaatggccaaaaatattatattatggtcaaccattagacttaattcaacaaatttgatgtgattagaaagatgtctgagtttgcggagaatcatatatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| || ||| |||||||||||||||| |
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| T |
1229945 |
ctaatggccaaaaatattatattatggtcaaccattagacttaatccaacgactttgatgtgattagaaagatgttcgattttacggagaatcatatatt |
1229846 |
T |
|
| Q |
229 |
ataagaattttaatgaccaaaccttcttaaggatccaatatattcttcttttgattggccttccatccct |
298 |
Q |
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||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1229845 |
ataaggattttagtgaccaaaccttcttaaggatccgatatattcttcttttgattggccttccatccct |
1229776 |
T |
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