View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0469_low_7 (Length: 310)
Name: NF0469_low_7
Description: NF0469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0469_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 33916071 - 33916342
Alignment:
| Q |
30 |
caatgctagtaacaactttttcaatggaagtattccattagagttaacatctcttcctcagttagaaactcttctactcgatcagaaccagctcaccggt |
129 |
Q |
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| T |
33916071 |
caatgctagtaacaactttttcaatggaagtattccattagagttaacatctcttcctcggttagaaactcttctactcgatcagaaccagctcaccggt |
33916170 |
T |
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| Q |
130 |
caaattccatcggatataacatcatggaagtctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatttgtcggttac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33916171 |
caaattccatcggatataacatcatggaagtctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatttgtcggttac |
33916270 |
T |
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| Q |
230 |
gttcacttagtatgttagacttatcagaaaaccagatctcaggccgaattccgcctcaactagcacctatga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33916271 |
gttcacttagtatgttagacttatcagaaaaccagatctcaggccgaattccgcctcaactagcacctatga |
33916342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 24792305 - 24792117
Alignment:
| Q |
31 |
aatgctagtaacaactttttcaatggaagtattccattagagttaacatctcttcctcagttagaaactcttctactcgatcagaaccagctcaccggtc |
130 |
Q |
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||||| || ||||| || || ||||||||||||||| |||||||||||| ||||| | ||| ||||||| | || |||||||| ||| |||| |||| |
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| T |
24792305 |
aatgcaaggaacaatttcttaaatggaagtattccacaagagttaacatcacttccaaaattaacaactcttttgcttgatcagaatcagttcactggtc |
24792206 |
T |
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| Q |
131 |
aaattccatcggatataacatcatggaagtctctagtaacattaaacttgagccacaatcaactatctggagaaatacctgatgcaatt |
219 |
Q |
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|||||||||| ||||||| |||||||||||| ||||||| | || |||||||| || ||||| |||||| |||| || ||||||||| |
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| T |
24792205 |
aaattccatctgatataatatcatggaagtccttagtaactcttaatttgagccagaaccaactttctggacaaattccagatgcaatt |
24792117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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