View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0470_low_1 (Length: 419)
Name: NF0470_low_1
Description: NF0470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0470_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 41785513 - 41785105
Alignment:
| Q |
1 |
tgttctcattgttcaattgttctgctacgtgtatcctctggttcaacaagcggttattgtcttccatttacttcctcatcttttctgccaattcttccat |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
41785513 |
tgttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaattcttccat |
41785414 |
T |
|
| Q |
101 |
tttcctttctgtcgatcgctgattcatcataagtttattcgaggtgattattgtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcc |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41785413 |
tttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaatggttgatgtctgatcc |
41785314 |
T |
|
| Q |
201 |
tttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785313 |
tttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcat |
41785214 |
T |
|
| Q |
301 |
tctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctcc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
41785213 |
tctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccataatctcaattgaagctcc |
41785114 |
T |
|
| Q |
401 |
attttcatc |
409 |
Q |
| |
|
||||||||| |
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|
| T |
41785113 |
attttcatc |
41785105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 85 - 406
Target Start/End: Complemental strand, 10834648 - 10834329
Alignment:
| Q |
85 |
ctgccaattcttccattttcctttctgtcgatcgctgattcatcataagtttattcgaggtgattattgtttgtttttgctccgcatttattcggtcaat |
184 |
Q |
| |
|
||||||||||||||||||||||||||| | || | |||||| | | | ||||| || ||||||| ||||||||||| ||| |||||||| ||||||| |
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|
| T |
10834648 |
ctgccaattcttccattttcctttctgccagtcaccgattcaacctgaacttatttgacatgattatggtttgtttttggtccacatttatttggtcaat |
10834549 |
T |
|
| Q |
185 |
tgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattcc |
284 |
Q |
| |
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|||| || |||||| |||||||| ||||| |||||||||||||| || ||||||||| | ||| |||| | |||||| | |||||| ||||| | | |
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|
| T |
10834548 |
ggttggtgcttgatccattatagttatctct-gatcagctatctgggttgcaaactttgtggttaaattttccacctttgccaggctttcagcatactgc |
10834450 |
T |
|
| Q |
285 |
ttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccatga |
384 |
Q |
| |
|
||||||||||||||||| ||| || |||||| ||||| |||| ||||| || || || |||| | |||||||||||||||||||||||||||||||| |
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| T |
10834449 |
ttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagttatcgaaatctagtcccatgtcattaacttcagcttttaaagccatga |
10834351 |
T |
|
| Q |
385 |
tctccattgaagctccattttc |
406 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
10834350 |
tctccatcgaagctccattttc |
10834329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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