View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0470_low_3 (Length: 323)
Name: NF0470_low_3
Description: NF0470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0470_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37155721 - 37155840
Alignment:
| Q |
1 |
agtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcagga |
100 |
Q |
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| T |
37155721 |
agtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcagga |
37155820 |
T |
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| Q |
101 |
caatattcagctaagtacca |
120 |
Q |
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| T |
37155821 |
caatattcagctaagtacca |
37155840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 37155899 - 37156035
Alignment:
| Q |
179 |
agcagataattatagttttacgtacttcccatgcaatgtcaccaacatgtagtgtttgattctcacgtatgaaattgcatgtggcttatgcttaacaact |
278 |
Q |
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| T |
37155899 |
agcagataattatagttttacgtacttcccatgcaatgtcaccaacatgtagtgtttgattctcacgtatgaaattgcatgtggcttatgctta------ |
37155992 |
T |
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| Q |
279 |
atgcatttgtcaaattagatgcggaaatgacgaggaaagaataga |
323 |
Q |
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| T |
37155993 |
--tcatttgtcaaattagatgcggaaatgacgaggaaaaaataga |
37156035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37161322 - 37161441
Alignment:
| Q |
1 |
agtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcagga |
100 |
Q |
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| T |
37161322 |
agtttcaactgctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaagatgatctgaggttggaacaccttcagtg |
37161421 |
T |
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| Q |
101 |
caatattcagctaagtacca |
120 |
Q |
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||||| ||||||||||||| |
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| T |
37161422 |
gaatatccagctaagtacca |
37161441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 37150595 - 37150714
Alignment:
| Q |
1 |
agtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcagga |
100 |
Q |
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|||||||||| |||||||| |||||||||||| || | |||||||||| |||||||||| ||||||||||||||||| || || |||||||| |||||| |
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| T |
37150595 |
agtttcgacgattagatggtcatcagggattgattcatgggcaagagaaagagaaacagtgcggagtttaagatgatccgacgttggaacaccctcagga |
37150694 |
T |
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| Q |
101 |
caatattcagctaagtacca |
120 |
Q |
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| T |
37150695 |
gagtatgcagctacgtacca |
37150714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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