View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0470_low_4 (Length: 253)

Name: NF0470_low_4
Description: NF0470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0470_low_4
NF0470_low_4
[»] scaffold1773 (1 HSPs)
scaffold1773 (1-176)||(1036-1210)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-176)||(50037-50211)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-176)||(11873-12049)
scaffold0026 (1-157)||(111563-111718)
[»] scaffold0924 (1 HSPs)
scaffold0924 (1-176)||(773-949)
[»] chr7 (14 HSPs)
chr7 (5-176)||(15168032-15168204)
chr7 (5-176)||(18873217-18873389)
chr7 (1-173)||(12709866-12710038)
chr7 (1-173)||(13122937-13123109)
chr7 (1-176)||(10895813-10895989)
chr7 (1-176)||(13743566-13743741)
chr7 (1-176)||(14422841-14423017)
chr7 (1-157)||(16009454-16009609)
chr7 (1-169)||(12590666-12590832)
chr7 (1-147)||(16677180-16677328)
chr7 (1-147)||(17651416-17651564)
chr7 (1-169)||(13007299-13007464)
chr7 (1-34)||(11382893-11382926)
chr7 (1-34)||(11389370-11389403)
[»] chr5 (8 HSPs)
chr5 (5-176)||(22750998-22751170)
chr5 (1-157)||(28370077-28370232)
chr5 (1-157)||(38144559-38144714)
chr5 (1-157)||(19512263-19512419)
chr5 (1-169)||(23528497-23528663)
chr5 (1-43)||(18407966-18408008)
chr5 (1-43)||(23111222-23111264)
chr5 (1-34)||(22438770-22438803)
[»] chr3 (10 HSPs)
chr3 (5-176)||(14762784-14762956)
chr3 (1-176)||(20247811-20247987)
chr3 (5-176)||(38310826-38310998)
chr3 (1-171)||(24192817-24192989)
chr3 (1-157)||(9534205-9534360)
chr3 (1-157)||(23370528-23370684)
chr3 (1-168)||(24933851-24934016)
chr3 (1-60)||(41455120-41455178)
chr3 (60-157)||(55499185-55499281)
chr3 (1-118)||(16801490-16801606)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-176)||(111738-111915)
[»] chr6 (16 HSPs)
chr6 (5-176)||(23057795-23057967)
chr6 (1-176)||(29614169-29614345)
chr6 (1-157)||(23839075-23839231)
chr6 (1-174)||(18800296-18800470)
chr6 (2-157)||(10986204-10986359)
chr6 (1-176)||(4477714-4477890)
chr6 (1-113)||(930118-930229)
chr6 (1-61)||(34640009-34640069)
chr6 (1-169)||(12168230-12168395)
chr6 (1-169)||(19287139-19287304)
chr6 (1-169)||(19785892-19786057)
chr6 (1-169)||(19878323-19878488)
chr6 (1-169)||(19884099-19884264)
chr6 (19-176)||(21565253-21565410)
chr6 (1-61)||(34646683-34646743)
chr6 (1-61)||(25469727-25469785)
[»] chr4 (3 HSPs)
chr4 (5-176)||(8045859-8046030)
chr4 (1-176)||(11847964-11848146)
chr4 (1-58)||(53483681-53483737)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-176)||(14418-14595)
[»] chr8 (7 HSPs)
chr8 (1-173)||(23866475-23866647)
chr8 (1-157)||(44477500-44477655)
chr8 (1-157)||(44492658-44492813)
chr8 (1-157)||(8727755-8727911)
chr8 (1-169)||(17054458-17054623)
chr8 (76-157)||(27940952-27941032)
chr8 (1-43)||(23482075-23482117)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-176)||(8597-8772)
scaffold0117 (1-176)||(1920-2095)
[»] chr2 (10 HSPs)
chr2 (1-157)||(6483595-6483750)
chr2 (1-157)||(6487062-6487217)
chr2 (5-176)||(19661480-19661651)
chr2 (1-147)||(26583715-26583859)
chr2 (19-176)||(23089096-23089253)
chr2 (17-157)||(23878885-23879024)
chr2 (19-157)||(23101504-23101641)
chr2 (1-43)||(23265133-23265175)
chr2 (1-43)||(23280201-23280243)
chr2 (1-58)||(5706046-5706102)
[»] chr1 (4 HSPs)
chr1 (1-157)||(20437046-20437202)
chr1 (1-61)||(41112008-41112067)
chr1 (1-43)||(18712790-18712832)
chr1 (1-43)||(32651563-32651605)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-156)||(11219-11374)
[»] scaffold0553 (1 HSPs)
scaffold0553 (1-157)||(10218-10374)
[»] scaffold0544 (1 HSPs)
scaffold0544 (1-157)||(1548-1704)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-176)||(149-323)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-175)||(18026-18202)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-118)||(30772-30890)
[»] scaffold0476 (1 HSPs)
scaffold0476 (19-174)||(3334-3490)
[»] scaffold0796 (2 HSPs)
scaffold0796 (1-156)||(1755-1907)
scaffold0796 (1-156)||(5778-5930)
[»] scaffold0456 (4 HSPs)
scaffold0456 (1-61)||(904-964)
scaffold0456 (1-61)||(8049-8109)
scaffold0456 (124-176)||(846-899)
scaffold0456 (124-176)||(7991-8044)
[»] scaffold0077 (1 HSPs)
scaffold0077 (19-157)||(3663-3800)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-58)||(45297-45353)
[»] scaffold0634 (1 HSPs)
scaffold0634 (138-176)||(3519-3558)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-43)||(16811-16853)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-43)||(116887-116929)


Alignment Details
Target: scaffold1773 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 1210 - 1036
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  1210 ctcaataatcataatctataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgaggattatgaagggaaat 1112  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1111 gggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatcata 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 50211 - 50037
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  50211 ctcaataatcataatctataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgaggattatgaagggaaat 50113  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50112 gggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatcata 50037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 11873 - 12049
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||| |||||||||||    
T  11873 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagagttagggtttgatgatgattctgaagggaaat 11972  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  11973 gggtaatgatcatgttaattctcttgtaatataatcttcagaatgaaaacttaatctttgttgttgctgtgatcata 12049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 111718 - 111563
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  111718 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattctg-aggggaat 111620  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  111619 gggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatct 111563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 773 - 949
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagtttt-ggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  773 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaaaataaattgagggttagggtttgatgaggattatgaagggaaa 872  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatcata 176  Q
    ||||||||||||||| |||| | ||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  873 tgggtaatgatcatgataatactcttgtaatataatgttcaggataaaaacttaatcttgttgttgatgtgatcata 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 15168204 - 15168032
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||||||    
T  15168204 ataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaatgggt 15168105  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  15168104 aatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 15168032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 18873389 - 18873217
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||||||    
T  18873389 ataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaatgggt 18873290  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  18873289 aatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 18873217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 12709866 - 12710038
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  12709866 ctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattatgaagagaaat 12709964  T
Q  101 gggtaatgatcatgttaattc-gcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatc 173  Q
    |||||||||||||||||||||   |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  12709965 gggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatcttgttgttgctgtgatc 12710038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 13122937 - 13123109
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  13122937 ctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattatgaagagaaat 13123035  T
Q  101 gggtaatgatcatgttaattc-gcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatc 173  Q
    |||||||||||||||||||||   |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13123036 gggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatcttgttgttgctgtgatc 13123109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 10895813 - 10895989
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagtttt-ggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||| ||||| || |||||||| |||| ||| |||||     
T  10895813 ctcaataatcataatctataatttttgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtttgatgatgattctgaggggaa- 10895911  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  10895912 tgggtattgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 10895989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 13743741 - 13743566
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  13743741 ctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattatgaagagaaat 13743643  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||  |||||| |||  |||||||| |||| ||||||||| |||| ||||||||||||||    
T  13743642 gggtaatgatcatgttaattttcttgtattatgctgttcagattgaagacttaatctatgttattgctgtgatcata 13743566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 14423017 - 14422841
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| || |||||||| |||| || |||| ||    
T  14423017 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgatgatgattctg-aggggaa 14422919  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    |||||| |||||||||||||||  ||||||| ||||||| |||||||||||||||||| | |||||| ||||||||||    
T  14422918 tgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatattgttgttgtgatcata 14422841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 16009609 - 16009454
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||  | |||||||| |||| || |||| |||    
T  16009609 ctcaataatcataatctataatttctgaaaattgacctaattgcatggttttggaagataaattgtgggttaaggtttgatgatgattctg-aggggaat 16009511  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  16009510 gggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatct 16009454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 12590666 - 12590832
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  12590666 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataatatgaaagttagggtttgatgatgattctgatgg--aat 12590762  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| ||||||||| |||||| | ||||||||||||    
T  12590763 gagtaaagatgatgttagttttcttggaatttaatgttaagaatgaaagcttaatccatgttgttgctgt 12590832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16677328 - 16677180
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaat-aaattgagggttgggatttgatgaggattatgaagggaa 98  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| || ||||| |||||| || |||||||| |||| ||| | | |    
T  16677328 ctcaataatcataatctataatttctaaaaattgacctaattgcatagtttttggaagataaaattaagggttagggtttgatgatgattttgaggagga 16677229  T
Q  99 atgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaa 147  Q
      | |||||||||||||||| |   ||||||  | ||||||||||||||    
T  16677228 tggtgtaatgatcatgttaaatatgttgtaaagtgatgttcagaatgaa 16677180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 17651564 - 17651416
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaat-aaattgagggttgggatttgatgaggattatgaagggaa 98  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| || ||||| |||||| || |||||||| |||| ||| | | |    
T  17651564 ctcaataatcataatctataatttctaaaaattgacctaattgcatagtttttggaagataaaattaagggttagggtttgatgatgattttgaggagga 17651465  T
Q  99 atgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaa 147  Q
      | |||||||||||||||| |   ||||||  | ||||||||||||||    
T  17651464 tggtgtaatgatcatgttaaatatgttgtaaagtgatgttcagaatgaa 17651416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13007464 - 13007299
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  13007464 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 13007368  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  13007367 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 13007299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11382893 - 11382926
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattg 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  11382893 ctcaataatcataatatataatttctgaaaattg 11382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11389370 - 11389403
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattg 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  11389370 ctcaataatcataatatataatttctgaaaattg 11389403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 22751170 - 22750998
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||||||    
T  22751170 ataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaatgggt 22751071  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  22751070 aatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 22750998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 28370077 - 28370232
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  28370077 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattttg-aggggaat 28370175  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||  ||||||| ||||||||||||||||||    
T  28370176 gggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatct 28370232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 38144559 - 38144714
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  38144559 ctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttgatgatgattctg-aggggaat 38144657  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  38144658 gggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 38144714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19512419 - 19512263
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| || |||||||| |||| || |||| ||    
T  19512419 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgatgatgattttg-aggggaa 19512321  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| |||||||||||||||  ||||||  ||||||| ||||||||||||||||||    
T  19512320 tgggtattgatcatgttaattctattgtaacgtaatgtttagaatgaaaacttaatct 19512263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 23528663 - 23528497
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  23528663 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 23528567  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  23528566 gagtaaggatgatgttagttttcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 23528497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18407966 - 18408008
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  18407966 ctcaataatcataatatataatttctgaaaattgatctaattg 18408008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23111222 - 23111264
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  23111222 ctcaataatcatagtatataatttctgaaaattgatctaattg 23111264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22438770 - 22438803
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattg 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  22438770 ctcaataatcataatgtataatttctgaaaattg 22438803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 14762784 - 14762956
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||||||    
T  14762784 ataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaatgggt 14762883  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  14762884 aatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 14762956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 20247811 - 20247987
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||    
T  20247811 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaat 20247910  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  20247911 gggtaatgatcatgttaattttcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 20247987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 38310826 - 38310998
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||||||    
T  38310826 ataatcataatctataatttctgaatattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaatgggt 38310925  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  38310926 aatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 38310998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 24192989 - 24192817
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagtttt-ggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||    
T  24192989 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgatgatgattctgaagggaaa 24192890  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtga 171  Q
    ||||||||||||||||||||||  ||||||| | |||||||||||||||||||||||| || |||||||||||    
T  24192889 tgggtaatgatcatgttaattctgttgtaatgtgatgttcagaatgaaaacttaatctatgctgttgctgtga 24192817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 9534360 - 9534205
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || || | |||    
T  9534360 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattctg-agtggaat 9534262  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  9534261 gggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatct 9534205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 23370528 - 23370684
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| || |||||||| |||| || |||| ||    
T  23370528 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtttgatgatgattctg-aggggaa 23370626  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  23370627 tgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatct 23370684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 24933851 - 24934016
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||   || || |||||||| |||| ||| ||  |||    
T  24933851 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataatatgaaaattagggtttgatgatgattctgatgg--aat 24933947  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctg 168  Q
    | |||| ||| |||||| ||  || | ||| ||||||| ||||||||| |||||| | |||||||||||    
T  24933948 gagtaaagatgatgttagttttctcggaatttaatgttaagaatgaaagcttaatccatgttgttgctg 24934016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41455120 - 41455178
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaata 60  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  41455120 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaata 41455178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 55499185 - 55499281
Alignment:
Q  60 aaattgagggttgggatttgatgaggattatgaagggaaatgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||||||||| || |||||||| |||| ||| ||||| |||||||||||||||||||||   ||||||| | |||||| |||||||| ||||||||    
T  55499185 aaattgagggttagggtttgatgatgattctgaggggaa-tgggtaatgatcatgttaattatgttgtaatgtgatgttcggaatgaaatcttaatct 55499281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 16801490 - 16801606
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaat-aaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||| ||| || ||||||| |||| ||  ||||||| |||| ||| | |||     
T  16801490 ctcaataatcata-tatataatttctgaaaattgacctgattgcttagcttttgaagataaaattgaaggttagg-gttgatgatgattttgaggagaat 16801587  T
Q  100 tgggtaatgatcatgttaa 118  Q
     | ||||||||||||||||    
T  16801588 ggtgtaatgatcatgttaa 16801606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 111915 - 111738
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaa-ttgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| ||||||||||    
T  111915 ctcaataatcataatctataatttctgaaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaa 111816  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  111815 tgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 111738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 23057967 - 23057795
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| |||||||||||||||    
T  23057967 ataatcataatctataattcctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctgaagggaaatgggt 23057868  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  23057867 aatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctgtgatcata 23057795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 29614169 - 29614345
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaa-taaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||||||||||| || |||||||| |||||||||||||||    
T  29614169 ctcaataatcataatctataatttctgaaaattgacctagttgcataattttggaaaaataaattgagggttagggtttgatgatgattatgaagggaaa 29614268  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    |||||||||||||||||||||| ||||| ||  |||||| ||||||||||||||||| ||||||||||||||||||||    
T  29614269 tgggtaatgatcatgttaattctcttgt-attgaatgtttagaatgaaaacttaatctttgttgttgctgtgatcata 29614345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23839231 - 23839075
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagt-tttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| || |||||||| |||| | ||||| ||    
T  23839231 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtgtttggaagataaattgagggttagggtttgatgatgattct-aaggggaa 23839133  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  23839132 tgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaacttaatct 23839075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 18800470 - 18800296
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaata-aattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| || |||| ||    
T  18800470 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaatagaattgagggttagggtttgatgatgattctggaggg-aa 18800372  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatca 174  Q
    || |||||||||||||||||||  ||||||| | ||||||| ||||||| |||||||| | |||||| ||||||||    
T  18800371 tgagtaatgatcatgttaattctgttgtaatgtgatgttcaaaatgaaatcttaatctatattgttgttgtgatca 18800296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 10986204 - 10986359
Alignment:
Q  2 tcaataatcataatctataatttctgaaaattgacctaattgcttagtttt-ggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||| || |||||||| |||| ||| ||||| |    
T  10986204 tcaataatcataatctataatttctaaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgatgatgattctgaggggaa-t 10986302  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  10986303 gggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaacttaatct 10986359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4477890 - 4477714
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| || |||||||| |||| || |||| ||    
T  4477890 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtttgatgatgattctg-aggggaa 4477792  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    |||||| |||||||| ||||||  ||||||| ||||||| |||||||||||||||||| | |||||| ||||||||||    
T  4477791 tgggtattgatcatgctaattctgttgtaatgtaatgtttagaatgaaaacttaatctatattgttgttgtgatcata 4477714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 930118 - 930229
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||||||||||||| || |||||||| | || ||||||| |||    
T  930118 ctcaataatcataatctatagtttctgaaaattgacctaattgtatagttttgaaaaataaattgagggttagggtttgatgatgtttctgaaggg-aat 930216  T
Q  101 gggtaatgatcat 113  Q
    |||||||||||||    
T  930217 gggtaatgatcat 930229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34640009 - 34640069
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataa 61  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  34640009 ctcaataatcttaatctataatttctgaaaattgacctaattgaatagttttggaaaataa 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12168395 - 12168230
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  12168395 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 12168299  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  12168298 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 12168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 19287304 - 19287139
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  19287304 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 19287208  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  19287207 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 19287139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 19785892 - 19786057
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||| |||  ||||||||||||||||| |||  ||| || |||||||| |||| ||| ||  |||    
T  19785892 ctcaataatcataatctataatttctg-aaattgacctagttgaatagttttggaaaataaaatgaaagttagggtttgatgatgattctgatgg--aat 19785988  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  19785989 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 19786057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 19878488 - 19878323
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  19878488 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 19878392  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  19878391 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 19878323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 19884264 - 19884099
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  19884264 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 19884168  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  19884167 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 19884099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 21565253 - 21565410
Alignment:
Q  19 taatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggtaatgatcatgttaa 118  Q
    ||||||| |||||||||||||||||||||   |||   |  |||||||||||| || |||||||| |||| | ||||| |||||||||||||||||||||    
T  21565253 taatttcggaaaattgacctaattgcttaaccttgaggataaaattgagggttagggtttgatgatgattct-aaggggaatgggtaatgatcatgttaa 21565351  T
Q  119 ttcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||   ||||||| | | |||| |||||||| |||||||| |  ||||||||||||||||    
T  21565352 ttatgttgtaatgtgacgttcggaatgaaatcttaatctatactgttgctgtgatcata 21565410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34646683 - 34646743
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataa 61  Q
    |||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||    
T  34646683 ctcaataatcttaatctataatttctgaaaattgacctaattgaataattttggaaaataa 34646743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25469727 - 25469785
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataa 61  Q
    ||||||||||||||||||||| ||||| |||||||||||||||  | ||||||||||||||    
T  25469727 ctcaataatcataatctataa-ttctg-aaattgacctaattgaatggttttggaaaataa 25469785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 8045859 - 8046030
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||    
T  8045859 ataatcataatctataatttctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgacgagaattctgaagggaaatgggt 8045957  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgtgatcata 176  Q
    || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8045958 aaagataatgttaattctcttgtaatataatgttcagaatgaaaacttaatccttgttgttgctgtgatcata 8046030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 11848146 - 11847964
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaa------ttgagggttgggatttgatgaggattatgaag 94  Q
    ||||||||||||||||||||||| ||||||||||||||| | || |||||||| ||||| ||      ||||||||| || |||||||| |||| |||||    
T  11848146 ctcaataatcataatctataattcctgaaaattgacctagtggcatagttttgaaaaattaaaatcaattgagggttagggtttgatgacgattctgaag 11848047  T
Q  95 ggaaatgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
     | |||||||||||||||||||||| |  || |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11848046 aggaatgggtaatgatcatgttaatccttttataatataatgttcagaatgaaaacttaatctttgttgttgctgtgatcata 11847964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 53483737 - 53483681
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaa 58  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  ||||||| |||||    
T  53483737 ctcaataatcataatctataattcctg-aaattgacctaattgaatagtttttgaaaa 53483681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14418 - 14595
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagtttt-ggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| || |||||||| |||| ||||||||||    
T  14418 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgatgatgattctgaagggaaa 14517  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||||  ||||||| | |||||| ||||||||||||||||| || ||||||||||||||||    
T  14518 tgggtaatgatcatgttaattctgttgtaatgtgatgttccgaatgaaaacttaatctatgctgttgctgtgatcata 14595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 23866647 - 23866475
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||| |||||    
T  23866647 ctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattatgaagagaaat 23866549  T
Q  101 gggtaatgatcatgttaattc-gcttgtaatataatgttcagaatgaaaacttaatcttgttgttgctgtgatc 173  Q
    |||||||||||||||||||||   |||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  23866548 gggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatcttgttgttgctctgatc 23866475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 44477655 - 44477500
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  44477655 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattttg-aggggaat 44477557  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||  ||||||| ||||||||||||||||||    
T  44477556 gggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatct 44477500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 44492813 - 44492658
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  44492813 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattttg-aggggaat 44492715  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||  ||||||| ||||||||||||||||||    
T  44492714 gggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatct 44492658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 8727755 - 8727911
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| || ||||| || |||| || ||||  |    
T  8727755 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgacgatgattctg-aggggta 8727853  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| |||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  8727854 tgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaacttaatct 8727911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 17054623 - 17054458
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  17054623 ctcaataatcataatctataattcctg-aaattgacctaattgaatagttttggaaaataagatgaaagttagggtttgatgatgattctgatgg--aat 17054527  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgt 169  Q
    | |||| ||| |||||| ||  |||| ||| ||||||| |||| |||| |||||| | ||||||||||||    
T  17054526 gagtaaagatgatgttagtt-tcttggaatttaatgttaagaacgaaatcttaatccatgttgttgctgt 17054458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 27940952 - 27941032
Alignment:
Q  76 tttgatgaggattatgaagggaaatgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||||| |||| ||| ||||| |||||| |||||||||||||||  ||||||| |||||||||||||||||| |||||||    
T  27940952 tttgatgatgattctgaggggaa-tgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaatttaatct 27941032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23482075 - 23482117
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  23482075 ctcaataatcatagtatataatttctgaaaattgatctaattg 23482117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 8597 - 8772
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaa-ttgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||| || |||||||| |||||||| ||  ||    
T  8597 ctcaataatcataatctataatttctgaaaaattgacctaattgtatagttttggaaaataatttgagggttagggtttgatgatgattatgatgg--aa 8694  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgtgatcata 176  Q
    ||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  8695 tgggtaatgattatgttaattctcttgtaatttaatgttcaaaatgaaaacttaatccttgttgttgctgtgatcata 8772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 1920 - 2095
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaa-ttgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||| || |||||||| |||| ||| ||  ||    
T  1920 ctcaataatcataatctataatttctgaaaaattgacctaattgtatagttttggaaaataatttgagggttagggtttgatgatgattttgatgg--aa 2017  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaat-cttgttgttgctgtgatcata 176  Q
    ||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  2018 tgggtaatgattatgttaattctcttgtaatttaatgttcataatgaaaacttaatccttgttgttgctgtgatcata 2095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6483750 - 6483595
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  6483750 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattttg-aggggaat 6483652  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||  ||||||| ||||||||||||||||||    
T  6483651 gggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatct 6483595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6487217 - 6487062
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  6487217 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattttg-aggggaat 6487119  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||| |||||||||||||||  ||||||  ||||||| ||||||||||||||||||    
T  6487118 gggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatct 6487062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 19661480 - 19661651
Alignment:
Q  5 ataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggt 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||| || |||| |||||||    
T  19661480 ataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttgatgatgattctg-aggggaatgggt 19661578  T
Q  105 aatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    | |||||||||||||||  ||||||| ||||||| |||||||||||||||||| | |||||| ||||||||||    
T  19661579 attgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatattgttgttgtgatcata 19661651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 26583859 - 26583715
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||  ||||||| |||| ||| ||||||     
T  26583859 ctcaataatcataatctataatttctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggcttgatgatgattctgaggggaaa- 26583762  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaa 147  Q
    |||||||||||||||||| |   ||||||  | ||||||||||||||    
T  26583761 gggtaatgatcatgttaaatatgttgtaaagtgatgttcagaatgaa 26583715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 23089096 - 23089253
Alignment:
Q  19 taatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggtaatgatcatgttaa 118  Q
    ||||||| |||||||||||||||||||||   |||   |  |||||||||||| || |||||||| |||| | ||||| |||||||||||||||||||||    
T  23089096 taatttcggaaaattgacctaattgcttaaccttgaggataaaattgagggttagggtttgatgatgattct-aaggggaatgggtaatgatcatgttaa 23089194  T
Q  119 ttcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||   ||||||| | | |||| |||||||| |||||||| |  ||||||||||||||||    
T  23089195 ttatgttgtaatgtgacgttcggaatgaaatcttaatctatactgttgctgtgatcata 23089253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 23879024 - 23878885
Alignment:
Q  17 tataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggtaatgatcatgtt 116  Q
    |||||||||  ||||||||||||||||||||   |||   | ||||||||||||| || || | ||| |||| ||| |||||  ||||||||||||||||    
T  23879024 tataatttcgaaaaattgacctaattgcttaaccttgaggattaaattgagggttagggtt-gttgatgattctgaggggaatggggtaatgatcatgtt 23878926  T
Q  117 aattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||||   ||||||| | ||||||||||||||| ||||||||    
T  23878925 aattatgttgtaatgtgatgttcagaatgaaatcttaatct 23878885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 23101504 - 23101641
Alignment:
Q  19 taatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggtaatgatcatgttaa 118  Q
    ||||||| ||||||||||||||||| |||   |||   |  |||||||||||| || |||||||| |||| ||| ||||| |||||||||||||||||||    
T  23101504 taatttcggaaaattgacctaattgtttaaccttgaggataaaattgagggttagggtttgatgatgattctgaggggaa-tgggtaatgatcatgttaa 23101602  T
Q  119 ttcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||   ||||||| | | |||| |||||||| ||||||||    
T  23101603 ttatgttgtaatgtgacgttcggaatgaaatcttaatct 23101641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23265175 - 23265133
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  23265175 ctcaataatcatagtatataatttctgaaaattgatctaattg 23265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23280243 - 23280201
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  23280243 ctcaataatcatagtatataatttctgaaaattgatctaattg 23280201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5706046 - 5706102
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaa 58  Q
    |||| |||||||||||||||||| ||| |||||||||||||||  ||||||| |||||    
T  5706046 ctcattaatcataatctataattcctg-aaattgacctaattgaatagtttttgaaaa 5706102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 20437046 - 20437202
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| || |||||||| |||| || |||| ||    
T  20437046 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttgatgatgattctg-aggggaa 20437144  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| ||||||||||||||   ||||||| ||||||||||||||||||||||||||    
T  20437145 tgggtattgatcatgttaattatgttgtaatgtaatgttcagaatgaaaacttaatct 20437202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41112067 - 41112008
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataa 61  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||| |||||||    
T  41112067 ctcaataatcataatctataatttctg-aaattgacctaattgaatagttttgaaaaataa 41112008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18712832 - 18712790
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  18712832 ctcaataatcatagtatataatttctgaaaattgatctaattg 18712790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32651605 - 32651563
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  32651605 ctcaataatcatagtatataatttctgaaaattgatctaattg 32651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 11374 - 11219
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaata-aattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| || |||| ||    
T  11374 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaatagaattgagggttagggtttgatgatgattctggaggg-aa 11276  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc 156  Q
    || |||||||||||||||||||  ||||||| | ||||||| ||||||| |||||||    
T  11275 tgagtaatgatcatgttaattctgttgtaatgtgatgttcaaaatgaaatcttaatc 11219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 10218 - 10374
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| || |||||||| |||| || |||| ||    
T  10218 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtttgatgatgattctg-aggggaa 10316  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  10317 tgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatct 10374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 1548 - 1704
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| || |||||||| |||| || |||| ||    
T  1548 ctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtttgatgatgattctg-aggggaa 1646  T
Q  100 tgggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  1647 tgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatct 1704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 323 - 149
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| |||    
T  323 ctcaataaccataatctataatttctgaaa-ttgacctaattgcatagttttggaaaataaattgagggttagggtttgatgatgattctg-aggggaat 226  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||||||||||||||||||||  |||||| |||  |||||||| |||| ||||||||| |||| ||| ||||||||||    
T  225 gggtaatgatcatgttaattttcttgtattatggtgttcagattgaagacttaatctatgttattgatgtgatcata 149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 18202 - 18026
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttag-ttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||  | ||| |||| |||| | | ||||||    
T  18202 ctcaataatcataatctataatttttgaaaattgacctaattgcttagctttaggaaaataaattgagggttaaggtttaatgatgattctaacgggaaa 18103  T
Q  100 tgggtaatgatcatgttaattc-gcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcat 175  Q
    | ||||||| |||||||||||| | ||||||| | |||| |||||||||||||||| || ||||||||||||||||||    
T  18102 t-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctgtgatcat 18026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 30890 - 30772
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaat-aaattgagggttgggatttgatgaggattatgaagggaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||||| || || |||||||| |||| ||| |||||     
T  30890 ctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaggtaaaattgaggattagggtttgatgatgattttgaggggaat 30791  T
Q  100 tgggtaatgatcatgttaa 118  Q
     | |||| |||||||||||    
T  30790 ggtgtaacgatcatgttaa 30772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 3334 - 3490
Alignment:
Q  19 taatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggtaatga-tcatgtta 117  Q
    ||||||| |||||||||||||||||||||   ||||  |  |||||||||||| || |||||||| |||| ||| ||||| |||||||||| ||||||||    
T  3334 taatttcggaaaattgacctaattgcttaaccttggggataaaattgagggttagggtttgatgatgattctgaggggaa-tgggtaatgaatcatgtta 3432  T
Q  118 attcgcttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatca 174  Q
    |||   ||||||| | ||||||||||||||| |||||||| |  ||||||||||||||    
T  3433 attttgttgtaatgtgatgttcagaatgaaatcttaatctatactgttgctgtgatca 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1755 - 1907
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  1755 ctcaataatcataatctataattcctg-aaattgacctaattgaatagttttggaaaataatatgaaagttagggtttgatgatgattctgatgg--aat 1851  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc 156  Q
    | |||| ||| |||||| ||  || | ||| ||||||| ||||||||| |||||||    
T  1852 gagtaaggatgatgttagttttctcggaatttaatgttaagaatgaaagcttaatc 1907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 5778 - 5930
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaat 100  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||  |||  ||| || |||||||| |||| ||| ||  |||    
T  5778 ctcaataatcataatctataattcctg-aaattgacctaattgaatagttttggaaaataatatgaaagttagggtttgatgatgattctgatgg--aat 5874  T
Q  101 gggtaatgatcatgttaattcgcttgtaatataatgttcagaatgaaaacttaatc 156  Q
    | |||| ||| |||||| ||  || | ||| ||||||| ||||||||| |||||||    
T  5875 gagtaaggatgatgttagttttctcggaatttaatgttaagaatgaaagcttaatc 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 964 - 904
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataa 61  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||    
T  964 ctcaataatcataatctatagtttctgaaaattgacctaattgcatagtcttggaagataa 904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8109 - 8049
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaataa 61  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||    
T  8109 ctcaataatcataatctatagtttctgaaaattgacctaattgcatagtcttggaagataa 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 899 - 846
Alignment:
Q  124 ttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  899 ttgtaatgtgatgttcagaatgaaaacttaatctgtgttgttgctgtgatcata 846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 8044 - 7991
Alignment:
Q  124 ttgtaatataatgttcagaatgaaaacttaatct-tgttgttgctgtgatcata 176  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  8044 ttgtaatgtgatgttcagaatgaaaacttaatctgtgttgttgctgtgatcata 7991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 3663 - 3800
Alignment:
Q  19 taatttctgaaaattgacctaattgcttagttttggaaaataaattgagggttgggatttgatgaggattatgaagggaaatgggtaatgatcatgttaa 118  Q
    ||||||| |||||||||||||||||||||   |||   |  |||||||||||| || |||||||| |||| ||| ||| | |||||||||||||||||||    
T  3663 taatttcggaaaattgacctaattgcttaaccttgaggataaaattgagggttagggtttgatgatgattctgaggggga-tgggtaatgatcatgttaa 3761  T
Q  119 ttcgcttgtaatataatgttcagaatgaaaacttaatct 157  Q
    ||   ||||||| | |||||| |||||||| ||||||||    
T  3762 ttatgttgtaatgtgatgttcggaatgaaatcttaatct 3800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45297 - 45353
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaa 58  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  ||||||| |||||    
T  45297 ctcaataatcataatctataattcctg-aaattgacctaattgaatagtttttgaaaa 45353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 3558 - 3519
Alignment:
Q  138 tcagaatgaaaacttaatc-ttgttgttgctgtgatcata 176  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  3558 tcagaatgaaaacttaatctttgttgttgctgtgatcata 3519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16853 - 16811
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  16853 ctcaataatcatagtatataatttctgaaaattgatctaattg 16811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 116929 - 116887
Alignment:
Q  1 ctcaataatcataatctataatttctgaaaattgacctaattg 43  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  116929 ctcaataatcatagtatataatttctgaaaattgatctaattg 116887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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