View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0470_low_5 (Length: 249)

Name: NF0470_low_5
Description: NF0470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0470_low_5
NF0470_low_5
[»] chr1 (2 HSPs)
chr1 (15-169)||(51386428-51386582)
chr1 (184-220)||(51386601-51386637)
[»] chr7 (1 HSPs)
chr7 (83-144)||(40723206-40723267)
[»] chr3 (2 HSPs)
chr3 (83-144)||(14174856-14174917)
chr3 (83-144)||(952216-952277)
[»] chr4 (3 HSPs)
chr4 (83-144)||(10714752-10714813)
chr4 (83-144)||(10928522-10928583)
chr4 (184-220)||(14991271-14991307)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-144)||(258161-258222)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 51386428 - 51386582
Alignment:
Q  15 ctctatgggcgagaacgtcttgatcgaaagctccacagtttccctctccgtcatcgtatccacaccgcttacatatcaaactctcttatcctaacctccg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51386428 ctctatgggcgagaacgtcttgatcgaaagctccacagtttccctctccgtcatcgtatccacaccgcttacatatcaaactctcttatcctaacctctg 51386527  T
Q  115 ttgatttgtccaattttttgaatctgaaccctgctttaataacgaaaaataaccc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386528 ttgatttgtccaattttttgaatctgaaccctgctttaataacgaaaaataaccc 51386582  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 51386601 - 51386637
Alignment:
Q  184 ctcagatgaagaacaaaattgaaacatgtacagtaat 220  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51386601 ctcatatgaagaacaaaattgaaacatgtacagtaat 51386637  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 40723267 - 40723206
Alignment:
Q  83 ttacatatcaaactctcttatcctaacctccgttgatttgtccaattttttgaatctgaacc 144  Q
    ||||||||||||||| |  |||||||||||||||||||| ||||||||||| ||||||||||    
T  40723267 ttacatatcaaactcacaaatcctaacctccgttgatttttccaatttttttaatctgaacc 40723206  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 14174856 - 14174917
Alignment:
Q  83 ttacatatcaaactctcttatcctaacctccgttgatttgtccaattttttgaatctgaacc 144  Q
    ||||||||||||||| |  |||||||||||||||||||| | ||||||||||||||||||||    
T  14174856 ttacatatcaaactcacaaatcctaacctccgttgatttttacaattttttgaatctgaacc 14174917  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 952216 - 952277
Alignment:
Q  83 ttacatatcaaactctcttatcctaacctccgttgatttgtccaattttttgaatctgaacc 144  Q
    |||||||||||||||    |||||||||||||||||||| ||||||||||||||||| ||||    
T  952216 ttacatatcaaactcaaaaatcctaacctccgttgatttttccaattttttgaatcttaacc 952277  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 10714752 - 10714813
Alignment:
Q  83 ttacatatcaaactctcttatcctaacctccgttgatttgtccaattttttgaatctgaacc 144  Q
    ||||||||||||||| |  |||||||||||| ||||||| ||||||||||||||| ||||||    
T  10714752 ttacatatcaaactcacaaatcctaacctccattgatttttccaattttttgaatatgaacc 10714813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 10928522 - 10928583
Alignment:
Q  83 ttacatatcaaactctcttatcctaacctccgttgatttgtccaattttttgaatctgaacc 144  Q
    ||||||||||||||| |  |||||||||||| ||||||| ||||||||||||||| ||||||    
T  10928522 ttacatatcaaactcacaaatcctaacctccattgatttttccaattttttgaatatgaacc 10928583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 14991307 - 14991271
Alignment:
Q  184 ctcagatgaagaacaaaattgaaacatgtacagtaat 220  Q
    |||||||| ||||||||||||||||||||||||||||    
T  14991307 ctcagatgcagaacaaaattgaaacatgtacagtaat 14991271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 258222 - 258161
Alignment:
Q  83 ttacatatcaaactctcttatcctaacctccgttgatttgtccaattttttgaatctgaacc 144  Q
    |||||||||||||||    |||||||||||||||||||| ||||| ||||| ||||||||||    
T  258222 ttacatatcaaactcataaatcctaacctccgttgatttttccaaattttttaatctgaacc 258161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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