View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0471-Insertion-1 (Length: 639)
Name: NF0471-Insertion-1
Description: NF0471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0471-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 7 - 639
Target Start/End: Complemental strand, 10035773 - 10035148
Alignment:
| Q |
7 |
acagagttcggccaaattattgcagcatgtcaggatatgatttcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgc |
106 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10035773 |
acagagttcggccaaattattgcaatatgtcaggatatgatttcctcctacttata----catttgaatttcaatttcagaatataaacatgttgaatgc |
10035678 |
T |
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| Q |
107 |
atcaattaaatgtttgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggatgtgtaaatttagaaaaatacacttctggaatc |
206 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10035677 |
atcaattaaat-tttgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggacgtgtaaatttagaaaaatacacttctggaatc |
10035579 |
T |
|
| Q |
207 |
taaaatccaaacacaataaatacaagatttcatgttgctccatgattgataaggctgcaagtgcacaattctatcgtcgtaataaaaacatcgatcacgg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035578 |
taaaatccaaacacaataaatacaagatttcatgttgttccatgattgataaggctgcaagtgcacaattctatcgtcgtaataaaaacatcgatcacgg |
10035479 |
T |
|
| Q |
307 |
gacttgttagtatcaaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgattgattgtttttgggaaatatgcagttta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10035478 |
gacttgttagtatcaaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgattgattgtttttgggaaatatgcagttta |
10035379 |
T |
|
| Q |
407 |
ataaaagatgtcttagaattattggagttcattagaacaatgaacaatcgaaaacccaactctttctaatgttttggggtatcaaagtcnnnnnnnnnnn |
506 |
Q |
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| T |
10035378 |
ataaaagatgtcttagaattattggagttgattagaacaatgaacaatcgaaatcccaactctttctaatgttatggggtatcaaagtc--atttttttt |
10035281 |
T |
|
| Q |
507 |
nnaaatggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtga |
606 |
Q |
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| T |
10035280 |
ttatatggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtga |
10035181 |
T |
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| Q |
607 |
cacctccacccaagaagaaaccaaccacaaaac |
639 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
10035180 |
cacctccacccaagaagaaaccaaccacaaaac |
10035148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 7 - 639
Target Start/End: Complemental strand, 10096141 - 10095517
Alignment:
| Q |
7 |
acagagttcggccaaattattgcagcatgtcaggatatgatttcctcctacttatatatacatttgaatttcaatttcagaatataaacatgttgaatgc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10096141 |
acagagttcggccaaattattgcagcatgtcaggatatgatttcctcctacttata----catttgaatttcaatttcagaatataaacatgttgaatgc |
10096046 |
T |
|
| Q |
107 |
atcaattaaatgtttgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggatgtgtaaatttagaaaaatacacttctggaatc |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096045 |
atcaattaaat-tttgtgttcctattcaaaatctggtatttaacacatcctaaatctaaaatttggatgtgtaaatttagaaaaatacacttctggaatc |
10095947 |
T |
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| Q |
207 |
taaaatccaaacacaataaatacaagatttcatgttgctccatgattgataaggctgcaagtgcacaattctatcgtcgtaataaaaacatcgatcacgg |
306 |
Q |
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| T |
10095946 |
taaaatccaaacacaataaatacaagatttcatgttgttccatgattgataaggctgcaagtgcacaattctatcgtcataataaaaacatcgatcatgg |
10095847 |
T |
|
| Q |
307 |
gacttgttagtatcaaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgattgattgtttttgggaaatatgcagttta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10095846 |
gacttgttagtatcaaggttattttttgtaagtgtttagctagatgtttagaatgtttaggaatttgatgatcgattgtttttgggaaatatgcagttta |
10095747 |
T |
|
| Q |
407 |
ataaaagatgtcttagaattattggagttcattagaacaatgaacaatcgaaaacccaactctttctaatgttttggggtatcaaagtcnnnnnnnnnnn |
506 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
10095746 |
ataaaagatgtcttagaatgattggagttgattagaacaatgaacaatcgaaatcccaactctttctaatgttatggggtatcaaagtc---attttttt |
10095650 |
T |
|
| Q |
507 |
nnaaatggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaaggaaagggaaacaatacaacaaggtgccgcctatatgcgtga |
606 |
Q |
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| T |
10095649 |
ttaaatggctaatttattctcgacgagtatatgcaagacgcacaaccactcgcggcaagaaaagggaaacaatacaacaaggtgccgcctatatgcgtga |
10095550 |
T |
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| Q |
607 |
cacctccacccaagaagaaaccaaccacaaaac |
639 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
10095549 |
cacctccacccaagaagaaaccaaccacaaaac |
10095517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 568
Target Start/End: Complemental strand, 31301698 - 31301637
Alignment:
| Q |
509 |
aaatggctaa-tttattctcgacgagtatatgcaagacgcac-aaccactcgcggcaaggaa |
568 |
Q |
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|||||||||| |||||||||||||||||||||||| | |||| || ||||||||||||||| |
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| T |
31301698 |
aaatggctaaatttattctcgacgagtatatgcaaaatgcacaaagaactcgcggcaaggaa |
31301637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 561
Target Start/End: Original strand, 31034327 - 31034371
Alignment:
| Q |
517 |
aatttattctcgacgagtatatgcaagacgcacaaccactcgcgg |
561 |
Q |
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| T |
31034327 |
aatttattctcgtcgagtaaatgcaagacgcataaacactcgcgg |
31034371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 549
Target Start/End: Complemental strand, 7226705 - 7226665
Alignment:
| Q |
509 |
aaatggctaatttattctcgacgagtatatgcaagacgcac |
549 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
7226705 |
aaatggcgaatttattcacgacgagtatatgcaagaagcac |
7226665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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