View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0471_high_1 (Length: 438)

Name: NF0471_high_1
Description: NF0471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0471_high_1
NF0471_high_1
[»] chr7 (1 HSPs)
chr7 (314-428)||(1579538-1579652)
[»] chr4 (3 HSPs)
chr4 (333-428)||(48847850-48847945)
chr4 (321-418)||(7588015-7588112)
chr4 (359-423)||(46784856-46784920)
[»] chr2 (2 HSPs)
chr2 (321-428)||(26790985-26791092)
chr2 (348-428)||(572883-572963)
[»] chr6 (2 HSPs)
chr6 (356-423)||(12646362-12646429)
chr6 (344-428)||(24894215-24894299)
[»] chr5 (1 HSPs)
chr5 (356-423)||(23621002-23621069)
[»] scaffold0214 (1 HSPs)
scaffold0214 (321-411)||(8631-8721)
[»] chr3 (1 HSPs)
chr3 (350-428)||(23424194-23424272)
[»] chr1 (1 HSPs)
chr1 (355-428)||(5193430-5193503)
[»] chr8 (1 HSPs)
chr8 (380-428)||(26586950-26586998)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 1579652 - 1579538
Alignment:
Q  314 gacactttcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcacca 413  Q
    |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1579652 gacactcttatagccctcatacccaaggcggaccctcccaccacttacaaagactttcgccccattagcctatgcaatatcatctacaaaatcatcacca 1579553  T
Q  414 aagtccttgttcatc 428  Q
    |||||||||||||||    
T  1579552 aagtccttgttcatc 1579538  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 333 - 428
Target Start/End: Original strand, 48847850 - 48847945
Alignment:
Q  333 tacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc 428  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48847850 tacccaaggccgaccctcccaccacttacaaagacttttgccccattagcctatgcaacatcttctacaaaatcatcaccaaagtccttgttcatc 48847945  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 7588112 - 7588015
Alignment:
Q  321 tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtc 418  Q
    |||| |||||||| |||||  ||||||||||||| || |  ||||||||||| ||||||||||| ||||||||  | |||||| ||||||||||||||    
T  7588112 tcattgccctcattcccaaaactgaccctcccacaacatttaaagactttcgacccattagcctttgcaacattgtgtacaaactcatcaccaaagtc 7588015  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 46784920 - 46784856
Alignment:
Q  359 tacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgt 423  Q
    |||||||||||| | || || ||||| |||||||| | |||||||||||||||||||||||||||    
T  46784920 tacaaagactttagacctatcagcctttgcaacataacctacaaaatcatcaccaaagtccttgt 46784856  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 26790985 - 26791092
Alignment:
Q  321 tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtcct 420  Q
    ||||||||||||| ||||| | |||||||||    || || ||||||||| | ||||||||||| || ||||||||||||||||| ||||| ||||||||    
T  26790985 tcatagccctcattcccaaagttgaccctcctttaacctataaagactttagacccattagcctttgtaacatcatctacaaaattatcactaaagtcct 26791084  T
Q  421 tgttcatc 428  Q
    ||| ||||    
T  26791085 tgtccatc 26791092  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 572883 - 572963
Alignment:
Q  348 ctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc 428  Q
    |||||| |||||||||||| ||| | ||||| ||||| ||||| |  |||||||| |||||||| ||||| ||||| ||||    
T  572883 ctcccatcacttacaaagattttagacccatcagcctctgcaatacgatctacaatatcatcacaaaagttcttgtgcatc 572963  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 12646429 - 12646362
Alignment:
Q  356 acttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgt 423  Q
    ||||||||||| ||  | ||||||||||| ||||||||  ||||||||||||| ||||||||||||||    
T  12646429 acttacaaagatttcagacccattagcctttgcaacattgtctacaaaatcattaccaaagtccttgt 12646362  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 24894299 - 24894215
Alignment:
Q  344 gaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc 428  Q
    ||||| |||||||||| |||||| ||| | ||||| || ||||||||||| |||||||| || ||| | ||||| ||||| ||||    
T  24894299 gacccccccaccactttcaaagattttagacccatcagtctatgcaacataatctacaagattatccctaaagttcttgtgcatc 24894215  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 423
Target Start/End: Complemental strand, 23621069 - 23621002
Alignment:
Q  356 acttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgt 423  Q
    ||||||||||| || || ||||| ||||| |||||||| ||||||||||| || ||||||||||||||    
T  23621069 acttacaaagatttccgtcccataagcctttgcaacataatctacaaaattattaccaaagtccttgt 23621002  T

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Target: scaffold0214 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 8631 - 8721
Alignment:
Q  321 tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcac 411  Q
    |||||||||| || ||||| | ||||||||||   || | |||||||||| | ||||||||||| || ||||||||||||||||| |||||    
T  8631 tcatagcccttatccccaaagttgaccctcccttaaccttcaaagactttagacccattagcctttgtaacatcatctacaaaattatcac 8721  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 428
Target Start/End: Original strand, 23424194 - 23424272
Alignment:
Q  350 cccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc 428  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||| |||||||| || ||||| ||||| ||||| ||||    
T  23424194 cccaccacttacaaagattttagacccataagtctatgcaacataatctacaagattatcactaaagttcttgtgcatc 23424272  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 5193503 - 5193430
Alignment:
Q  355 cacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc 428  Q
    |||||||||||| ||| | ||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| ||||    
T  5193503 cacttacaaagattttagacccatcagcctctgcaacataatctacaagattatcacaaaagttcttgtgcatc 5193430  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 428
Target Start/End: Original strand, 26586950 - 26586998
Alignment:
Q  380 agcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc 428  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||| ||||    
T  26586950 agcctctgcaacataacctataaaatcatcaccaaagtccttgtccatc 26586998  T

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