View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0471_low_7 (Length: 296)

Name: NF0471_low_7
Description: NF0471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0471_low_7
NF0471_low_7
[»] chr5 (32 HSPs)
chr5 (23-253)||(41558672-41558902)
chr5 (1-52)||(41558679-41558730)
chr5 (58-130)||(13287423-13287495)
chr5 (58-128)||(6770508-6770578)
chr5 (52-130)||(41995434-41995512)
chr5 (57-104)||(16199308-16199354)
chr5 (58-112)||(31264421-31264473)
chr5 (52-114)||(9449448-9449510)
chr5 (60-130)||(19579664-19579734)
chr5 (57-115)||(22423835-22423893)
chr5 (60-113)||(7175045-7175098)
chr5 (58-123)||(24906325-24906390)
chr5 (58-130)||(21191080-21191152)
chr5 (58-130)||(21522713-21522785)
chr5 (58-130)||(21533279-21533351)
chr5 (60-128)||(22013379-22013447)
chr5 (58-130)||(26205784-26205856)
chr5 (57-113)||(32428949-32429005)
chr5 (69-128)||(19820429-19820488)
chr5 (63-130)||(42469184-42469251)
chr5 (52-86)||(11596473-11596507)
chr5 (60-130)||(19552569-19552639)
chr5 (63-125)||(36642791-36642853)
chr5 (58-127)||(6247588-6247657)
chr5 (57-110)||(19737505-19737558)
chr5 (57-86)||(28296335-28296364)
chr5 (61-106)||(36908736-36908781)
chr5 (61-106)||(36908785-36908830)
chr5 (70-130)||(15382440-15382500)
chr5 (52-115)||(15405073-15405134)
chr5 (57-93)||(39424641-39424677)
chr5 (58-110)||(39698524-39698576)
[»] scaffold0007 (1 HSPs)
scaffold0007 (52-130)||(225286-225364)
[»] chr3 (27 HSPs)
chr3 (61-130)||(24205068-24205137)
chr3 (60-128)||(55401040-55401108)
chr3 (58-130)||(3164049-3164121)
chr3 (75-130)||(10335327-10335382)
chr3 (52-110)||(11093553-11093611)
chr3 (59-130)||(750643-750715)
chr3 (58-130)||(15796318-15796390)
chr3 (58-130)||(16000040-16000112)
chr3 (66-130)||(26665099-26665163)
chr3 (58-93)||(16789674-16789709)
chr3 (58-129)||(28917965-28918036)
chr3 (52-107)||(41319328-41319383)
chr3 (60-107)||(46191371-46191418)
chr3 (52-86)||(34909875-34909909)
chr3 (70-107)||(2608425-2608462)
chr3 (57-86)||(9210848-9210877)
chr3 (58-130)||(4990991-4991063)
chr3 (58-130)||(8383220-8383292)
chr3 (60-128)||(8587047-8587115)
chr3 (58-114)||(11493385-11493441)
chr3 (58-86)||(20691326-20691354)
chr3 (58-86)||(21149074-21149102)
chr3 (58-130)||(25652055-25652127)
chr3 (58-110)||(29112304-29112356)
chr3 (50-86)||(33548849-33548885)
chr3 (58-98)||(34189422-34189462)
chr3 (67-107)||(35335587-35335627)
[»] scaffold0306 (1 HSPs)
scaffold0306 (58-128)||(13365-13435)
[»] scaffold0152 (1 HSPs)
scaffold0152 (58-128)||(21892-21962)
[»] chr7 (22 HSPs)
chr7 (60-130)||(11061102-11061172)
chr7 (58-128)||(27945006-27945076)
chr7 (61-129)||(43249957-43250025)
chr7 (58-130)||(5409860-5409932)
chr7 (52-130)||(1885536-1885614)
chr7 (58-114)||(23930198-23930254)
chr7 (52-108)||(30516375-30516431)
chr7 (57-101)||(35238207-35238251)
chr7 (52-107)||(36013816-36013872)
chr7 (58-129)||(11722122-11722193)
chr7 (58-125)||(26733272-26733339)
chr7 (52-95)||(38134424-38134467)
chr7 (60-130)||(598171-598241)
chr7 (96-130)||(9778471-9778505)
chr7 (58-128)||(24339607-24339677)
chr7 (58-132)||(36297369-36297442)
chr7 (52-86)||(44172908-44172942)
chr7 (63-104)||(927866-927907)
chr7 (52-93)||(3801223-3801264)
chr7 (58-95)||(4909149-4909186)
chr7 (58-130)||(17851394-17851466)
chr7 (58-130)||(21141006-21141078)
[»] chr8 (26 HSPs)
chr8 (52-101)||(34201064-34201113)
chr8 (57-130)||(22651939-22652012)
chr8 (58-128)||(28642373-28642443)
chr8 (52-129)||(18170500-18170577)
chr8 (52-129)||(18634068-18634145)
chr8 (61-130)||(44067479-44067548)
chr8 (58-110)||(14692443-14692494)
chr8 (58-126)||(29510328-29510396)
chr8 (68-107)||(11815815-11815854)
chr8 (58-93)||(40063951-40063986)
chr8 (60-130)||(2572082-2572152)
chr8 (58-128)||(24362226-24362296)
chr8 (58-128)||(25192371-25192441)
chr8 (60-130)||(39820392-39820462)
chr8 (97-130)||(926851-926884)
chr8 (60-93)||(13845234-13845267)
chr8 (52-105)||(14227210-14227263)
chr8 (66-107)||(14943129-14943170)
chr8 (58-130)||(24413583-24413656)
chr8 (58-87)||(28883902-28883931)
chr8 (52-85)||(29198497-29198530)
chr8 (52-93)||(29447128-29447169)
chr8 (58-126)||(13436988-13437056)
chr8 (60-120)||(20873042-20873102)
chr8 (58-86)||(30068052-30068080)
chr8 (52-92)||(37225761-37225801)
[»] chr4 (30 HSPs)
chr4 (52-113)||(34589724-34589785)
chr4 (60-128)||(12895300-12895368)
chr4 (58-130)||(23293010-23293082)
chr4 (58-130)||(24343470-24343542)
chr4 (56-107)||(48845126-48845178)
chr4 (52-106)||(19230327-19230381)
chr4 (60-130)||(27706203-27706273)
chr4 (58-130)||(36635287-36635359)
chr4 (58-113)||(7012046-7012101)
chr4 (58-129)||(21945467-21945538)
chr4 (52-107)||(37496690-37496745)
chr4 (58-113)||(40179660-40179715)
chr4 (52-99)||(43506162-43506209)
chr4 (52-86)||(5654609-5654643)
chr4 (52-86)||(10546155-10546189)
chr4 (52-86)||(18513259-18513293)
chr4 (60-130)||(35158011-35158081)
chr4 (57-86)||(14465317-14465346)
chr4 (57-126)||(20521872-20521941)
chr4 (58-115)||(22440624-22440681)
chr4 (52-93)||(24613719-24613760)
chr4 (58-99)||(31243572-31243613)
chr4 (31-101)||(40224524-40224598)
chr4 (57-86)||(43188619-43188648)
chr4 (67-107)||(7367539-7367579)
chr4 (58-86)||(20743302-20743330)
chr4 (58-86)||(32910558-32910586)
chr4 (67-107)||(48557611-48557651)
chr4 (58-130)||(53968509-53968581)
chr4 (52-100)||(54621805-54621853)
[»] chr6 (38 HSPs)
chr6 (64-128)||(33303624-33303688)
chr6 (58-129)||(34595098-34595169)
chr6 (52-128)||(1334626-1334702)
chr6 (58-130)||(8776997-8777069)
chr6 (58-130)||(16766660-16766732)
chr6 (60-130)||(426540-426610)
chr6 (60-130)||(6389706-6389776)
chr6 (60-130)||(7625085-7625155)
chr6 (52-106)||(9024194-9024248)
chr6 (59-128)||(8365544-8365613)
chr6 (60-128)||(853885-853953)
chr6 (58-130)||(9107394-9107466)
chr6 (63-111)||(10760870-10760918)
chr6 (57-113)||(15443675-15443731)
chr6 (59-130)||(9027141-9027212)
chr6 (58-125)||(19044432-19044499)
chr6 (62-121)||(20518317-20518376)
chr6 (57-111)||(33135813-33135868)
chr6 (52-86)||(2140499-2140533)
chr6 (60-130)||(7938079-7938149)
chr6 (58-120)||(12696297-12696359)
chr6 (60-94)||(21385170-21385204)
chr6 (52-93)||(4859131-4859172)
chr6 (67-104)||(7250996-7251033)
chr6 (52-113)||(7942235-7942296)
chr6 (60-129)||(13211307-13211376)
chr6 (58-115)||(13851714-13851771)
chr6 (60-117)||(25038097-25038154)
chr6 (61-130)||(25096386-25096455)
chr6 (58-107)||(34446551-34446600)
chr6 (60-143)||(2153913-2153994)
chr6 (58-130)||(5000650-5000722)
chr6 (58-130)||(7977854-7977926)
chr6 (52-112)||(15489750-15489810)
chr6 (62-110)||(19147431-19147479)
chr6 (58-86)||(29711269-29711297)
chr6 (52-128)||(30866162-30866238)
chr6 (60-88)||(33076413-33076441)
[»] chr1 (25 HSPs)
chr1 (58-130)||(1486733-1486805)
chr1 (61-134)||(22794105-22794178)
chr1 (58-130)||(34298399-34298471)
chr1 (60-115)||(7779587-7779641)
chr1 (58-113)||(16812523-16812578)
chr1 (58-125)||(20157374-20157441)
chr1 (58-127)||(398789-398858)
chr1 (59-128)||(10572614-10572683)
chr1 (75-128)||(48040503-48040556)
chr1 (58-126)||(7918235-7918303)
chr1 (57-128)||(1262849-1262920)
chr1 (58-129)||(2896145-2896216)
chr1 (52-87)||(3921673-3921708)
chr1 (55-93)||(1829428-1829466)
chr1 (52-86)||(11571592-11571626)
chr1 (60-130)||(15323126-15323196)
chr1 (52-86)||(40747791-40747825)
chr1 (60-106)||(43328454-43328500)
chr1 (52-113)||(38078679-38078740)
chr1 (69-130)||(40917714-40917775)
chr1 (60-128)||(5927366-5927434)
chr1 (58-130)||(6612195-6612267)
chr1 (62-106)||(8203809-8203852)
chr1 (58-86)||(42325567-42325595)
chr1 (58-130)||(42359473-42359545)
[»] chr2 (22 HSPs)
chr2 (60-130)||(23354678-23354748)
chr2 (58-115)||(12940959-12941016)
chr2 (58-130)||(15972836-15972908)
chr2 (58-130)||(36756368-36756440)
chr2 (60-120)||(18841039-18841099)
chr2 (60-128)||(20539700-20539768)
chr2 (60-128)||(23355021-23355089)
chr2 (52-115)||(10254005-10254068)
chr2 (58-125)||(18421931-18421998)
chr2 (58-128)||(19536421-19536492)
chr2 (57-124)||(39399881-39399948)
chr2 (52-86)||(18570979-18571013)
chr2 (52-86)||(30563416-30563450)
chr2 (60-130)||(34785008-34785078)
chr2 (52-106)||(37497107-37497161)
chr2 (52-86)||(40681989-40682023)
chr2 (52-126)||(43586023-43586097)
chr2 (59-128)||(11670720-11670789)
chr2 (58-86)||(10535783-10535811)
chr2 (58-130)||(15657827-15657899)
chr2 (54-86)||(25317144-25317176)
chr2 (58-130)||(28412313-28412385)
[»] scaffold0223 (1 HSPs)
scaffold0223 (58-128)||(20137-20207)
[»] scaffold0053 (1 HSPs)
scaffold0053 (69-130)||(8761-8822)
[»] scaffold0003 (1 HSPs)
scaffold0003 (60-129)||(241558-241627)
[»] scaffold0168 (1 HSPs)
scaffold0168 (62-130)||(21006-21074)
[»] scaffold0027 (1 HSPs)
scaffold0027 (58-130)||(46645-46717)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-125)||(178854-178910)
[»] scaffold0008 (1 HSPs)
scaffold0008 (58-130)||(263396-263468)
[»] scaffold0598 (1 HSPs)
scaffold0598 (58-113)||(8077-8132)
[»] scaffold0571 (1 HSPs)
scaffold0571 (57-86)||(7697-7726)
[»] scaffold0020 (1 HSPs)
scaffold0020 (59-128)||(135337-135406)
[»] scaffold0122 (1 HSPs)
scaffold0122 (58-130)||(8629-8701)
[»] scaffold0085 (1 HSPs)
scaffold0085 (57-113)||(26373-26429)
[»] scaffold0021 (1 HSPs)
scaffold0021 (58-130)||(130445-130517)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 41558672 - 41558902
Alignment:
Q  23 ttactttgaattatgtcattttctcaaatttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558672 ttacattgaattatgtcattttctcaaatttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggt 41558771  T
Q  123 gtccgtgtgtttgtgcttcatggcttctgatagaagttgtgtctggcaaatgtcggtgttggacattgacgtgtgtgataaaattcaattcattcacttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558772 gtccgtgtgtttgtgcttcatggcttctgatagaagttgtgtctggcaaatgtcggtgttggacattgacgtgtgtgataaaattcaattcattcacttt 41558871  T
Q  223 ttaataaagaattattcataagcctttgtat 253  Q
    |||||||||||||||||||||||||||||||    
T  41558872 ttaataaagaattattcataagcctttgtat 41558902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41558679 - 41558730
Alignment:
Q  1 gaattatgtcattttctcaaatttactttgaattatgtcattttctcaaatt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558679 gaattatgtcattttctcaaatttactttgaattatgtcattttctcaaatt 41558730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 13287423 - 13287495
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||| |||||| | |||| |||||||||||||| ||||||||||||||    
T  13287423 tgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgtgt 13287495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 6770578 - 6770508
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||| | | ||||||||||    
T  6770578 tgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgttcggtgtccgt 6770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 41995512 - 41995434
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||| ||||||||||| ||||| || |||||||| |||||||   ||||||||||| ||||||||||| ||||||||||    
T  41995512 ttacattgaattatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtgt 41995434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 16199308 - 16199354
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagt 104  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  16199308 ttgaattatgtcattttgtcaaattattatttgtgt-aatgtgtcagt 16199354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 31264473 - 31264421
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgt 112  Q
    |||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||    
T  31264473 tgaattatgtcattttctcaaattattacttgtgtcgatgtgt--gtgtccgtgt 31264421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 9449510 - 9449448
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcg 114  Q
    |||| ||||||||||| ||||||||||||||||||| |||||   ||| ||||||||||||||    
T  9449510 ttacattgaattatgtgattttctcaaattattattggtgtcggcgtgccagtgtccgtgtcg 9449448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 19579734 - 19579664
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| |||||||||||||||||  ||||||   || ||||||||||||| |||||||||||| ||||    
T  19579734 aattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgttgtatccggtgtcggtgt 19579664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 22423835 - 22423893
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    ||||||||||| ||||||||||||||||| | ||||||  |||||||| ||||||||||    
T  22423835 ttgaattatgtgattttctcaaattattagtagtgtcagggtgtcagtatccgtgtcgt 22423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 7175045 - 7175098
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||||||| |||||||||||||||||   ||||| |||||||||||||||||||    
T  7175045 aattatgtgattttctcaaattattaacggtgtcgatgtgtcagtgtccgtgtc 7175098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 24906325 - 24906390
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtg 123  Q
    |||||||||||||||| |||||||||||| |||||    |||||||||| |||||||| |||||||    
T  24906325 tgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgttcgtgtcgtgtccggtg 24906390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 21191080 - 21191152
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||||||    |||||||||||||||||| ||||||||| ||||    
T  21191080 tgaattatgtgattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtcagtgt 21191152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 21522785 - 21522713
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| | |||||||||  ||||||   ||||||||||||||||||| ||||||| ||||||    
T  21522785 tgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgt 21522713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 21533351 - 21533279
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| | |||||||||  ||||||   ||||||||||||||||||| ||||||| ||||||    
T  21533351 tgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgt 21533279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 22013447 - 22013379
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||| |||||  ||||||||||  ||||||   ||||||||||||||||||| ||||||||||||    
T  22013447 aattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 22013379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 26205784 - 26205856
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||||||||||||||| | ||||  || || | |||||||||||| |||| | ||||||||||||||    
T  26205784 tgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtccgtgt 26205856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 32428949 - 32429005
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    ||||||||||||| ||||||||||||||||  ||||||   ||||||||||||||||    
T  32428949 ttgaattatgtcactttctcaaattattatcagtgtcaccatgtcagtgtccgtgtc 32429005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 19820429 - 19820488
Alignment:
Q  69 attttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||||||||||   |||||   ||||||||||||||||||| ||||||||||||    
T  19820429 attttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgt 19820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 42469251 - 42469184
Alignment:
Q  63 tatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||||||||||||||||  |||||   |||||| | |||||||||| | ||||||||||||    
T  42469251 tatgtcattttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgt 42469184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 11596473 - 11596507
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  11596473 ttacattgaattatgtcattttctcaaattattat 11596507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 19552569 - 19552639
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||| |||||||||||  ||||||   ||||||||||||||||||| | ||||| ||||||    
T  19552569 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgttcggtggccgtgt 19552639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 36642791 - 36642853
Alignment:
Q  63 tatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtc 125  Q
    ||||||| ||| |||||||||||  ||||||   ||||||||||||||||||| |||||||||    
T  36642791 tatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 36642853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 6247657 - 6247588
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccg 127  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||||||| ||| |||| |||||||||||    
T  6247657 tgaattatgtgattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccg 6247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 19737505 - 19737558
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 110  Q
    ||||||||||| ||||||||||||||||||  || |||  ||||||||||||||    
T  19737505 ttgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtccgt 19737558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 28296364 - 28296335
Alignment:
Q  57 ttgaattatgtcattttctcaaattattat 86  Q
    ||||||||||||||||||||||||||||||    
T  28296364 ttgaattatgtcattttctcaaattattat 28296335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 36908736 - 36908781
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  36908736 attatgtcatttgctcaaattattattggtgtctatgtgtcggtgt 36908781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 36908785 - 36908830
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  36908785 attatgtcatttgctcaaattattattggtgtctatgtgtcggtgt 36908830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 15382500 - 15382440
Alignment:
Q  70 ttttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||| |||||||||||  ||||||   |||||| |||||||||||| ||||||||||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgt 15382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 15405073 - 15405134
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    |||| ||||||||| | ||||| ||||||||||| ||||||||  |||| ||||||||||||||    
T  15405073 ttacattgaattatatgattttttcaaattattagttgtgtca--gtgttagtgtccgtgtcgt 15405134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 39424677 - 39424641
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtc 93  Q
    |||||| |||||||||||||||||||||||| |||||    
T  39424677 ttgaatcatgtcattttctcaaattattattggtgtc 39424641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 39698576 - 39698524
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 110  Q
    |||||||||| ||||| |||||||||||  |||||||  ||||||||||||||    
T  39698576 tgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgt 39698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 225286 - 225364
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||| ||| |||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||||||||||||    
T  225286 ttacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 225364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 24205068 - 24205137
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||||||||||||||||||  |||||   ||||||||||||||||||| ||||||||||||||    
T  24205068 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 24205137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 55401108 - 55401040
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||| ||||| ||||||||||| |||||||   || |||||||||||||||||||||||||||||    
T  55401108 aattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgt 55401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 3164049 - 3164121
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  |||||| | ||| || |||||||||||| ||||||||||||||    
T  3164049 tgaattatgtgattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgtgt 3164121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 10335327 - 10335382
Alignment:
Q  75 tcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 10335382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 11093611 - 11093553
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 110  Q
    |||||||||||||||||||||| ||||||||||||  |||| |||||||| ||| ||||    
T  11093611 ttactttgaattatgtcattttttcaaattattatcagtgtaaatgtgtccgtgcccgt 11093553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 750643 - 750715
Alignment:
Q  59 gaattatgtcattttctcaaattattatttgtgtcaatgtgtca-gtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||| || || ||||||||||| |||||||   |||||| ||||||||||||| ||||||||||||||    
T  750643 gaattatgtgatattttcaaattattagttgtgtcgccgtgtcaagtgtccgtgtcgtgtccggtgtccgtgt 750715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 15796318 - 15796390
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| | ||||| |||||||||||  ||||||   |||||| |||||||||||| ||||||||||||||    
T  15796318 tgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgt 15796390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 16000040 - 16000112
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| | ||||||||| |||||||   ||||||||||| ||||||| | ||||||||||||    
T  16000040 tgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgt 16000112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 26665163 - 26665099
Alignment:
Q  66 gtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||||||||||||||||||||  | | || ||||| |||| ||||||| |||||||||    
T  26665163 gtcattttctcaaattattatttgtgtcggtttatcggtgtctgtgttgtatccgatgtccgtgt 26665099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 16789674 - 16789709
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtc 93  Q
    ||||||||||||||||||||||||||||| ||||||    
T  16789674 tgaattatgtcattttctcaaattattatctgtgtc 16789709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 28918036 - 28917965
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||||| ||||| |||||||||||  | ||||   |||||||| |||||||||| |||||||||||||    
T  28918036 tgaattatgtgattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtg 28917965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 41319328 - 41319383
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||| ||||||||||||||||| ||||||||||||| ||||| | ||||| |||||    
T  41319328 ttacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 46191371 - 46191418
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||||||| ||||||||||||||||||| ||||| ||||||| |||||    
T  46191371 aattatgtgattttctcaaattattattggtgtcgatgtgtccgtgtc 46191418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 34909909 - 34909875
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    ||||||||||||||||||| |||||||||||||||    
T  34909909 ttactttgaattatgtcatattctcaaattattat 34909875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 2608462 - 2608425
Alignment:
Q  70 ttttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  2608462 ttttctcaaaatattattagtgtcaatgtgtcagtgtc 2608425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 9210848 - 9210877
Alignment:
Q  57 ttgaattatgtcattttctcaaattattat 86  Q
    ||||||||||||||||||||||||||||||    
T  9210848 ttgaattatgtcattttctcaaattattat 9210877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 4990991 - 4991063
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||||||||| |||||   |||||   |||||||| |||||||||| | ||||||||||||    
T  4990991 tgaattatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgt 4991063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 8383292 - 8383220
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| | |||||||||||||||||   |||||   |||||| |||||||||||| ||| ||||||||||    
T  8383292 tgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgt 8383220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 8587047 - 8587115
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||| ||||| |||||||| ||  ||||||   ||||||||||||||||| | ||||||||||||    
T  8587047 aattatgtgattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgt 8587115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 11493385 - 11493441
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcg 114  Q
    |||||||||| ||||||||| ||||||| | ||||| | |||||| |||||||||||    
T  11493385 tgaattatgtgattttctcacattattagtggtgtcgacgtgtcaatgtccgtgtcg 11493441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 20691354 - 20691326
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  20691354 tgaattatgtcattttctcaaattattat 20691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 21149102 - 21149074
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  21149102 tgaattatgtcattttctcaaattattat 21149074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 25652055 - 25652127
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||||||||||||||||||  ||||    |||| |||||||||||||| || ||||| |||||    
T  25652055 tgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggtgttcgtgt 25652127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 29112304 - 29112356
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 110  Q
    |||||||| | |||||||||||| |||| | ||||||| ||||||||||||||    
T  29112304 tgaattatatgattttctcaaataattagtggtgtcaacgtgtcagtgtccgt 29112356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 33548885 - 33548849
Alignment:
Q  50 atttactttgaattatgtcattttctcaaattattat 86  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  33548885 atttactctgaattaagtcattttctcaaattattat 33548849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 34189462 - 34189422
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgt 98  Q
    |||| |||||||||||||||||||||||| |||||| ||||    
T  34189462 tgaaatatgtcattttctcaaattattatctgtgtcgatgt 34189422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 35335627 - 35335587
Alignment:
Q  67 tcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    ||||||||||||||||||| | ||||| |||||||||||||    
T  35335627 tcattttctcaaattattactagtgtctatgtgtcagtgtc 35335587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 13435 - 13365
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||||||||||||||| |||||||   ||||||||||||||||| | ||||||||||||    
T  13435 tgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgt 13365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 21892 - 21962
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||||||||||||||| |||||||   ||||||||||||||||| | ||||||||||||    
T  21892 tgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgt 21962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 11061102 - 11061172
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||| |||||||||||  ||||||  ||||||||||||||||||||||||| |||||||||    
T  11061102 aattatgtgattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccgatgtccgtgt 11061172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 27945076 - 27945006
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||||||||||||||| | |||||   ||||||||||||||||||| ||||||||||||    
T  27945076 tgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 27945006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 43250025 - 43249957
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    ||||||||||||||||||||||||||  |||||   ||||||||||||||||| | |||||||||||||    
T  43250025 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgtg 43249957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 5409860 - 5409932
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||| |||  |||||||||||| |||||||||||||||| ||||    
T  5409860 tgaattatgtgattttttcaaattattagctgtatcagcgtgtcagtgtccatgtcgtatccggtgtctgtgt 5409932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 1885614 - 1885536
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||| ||||||||||||||||| ||||| | ||||  ||||| ||||||| || || ||||||| ||||||||||||||    
T  1885614 ttacattgaattatgtcattttttcaaaattttatccgtgtcgatgtgtccgtatcagtgtcgtgtccggtgtccgtgt 1885536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 23930254 - 23930198
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcg 114  Q
    ||||||||||||||||||||||||| |||  ||||| |||||||| |||| ||||||    
T  23930254 tgaattatgtcattttctcaaattactatccgtgtcgatgtgtcaatgtcggtgtcg 23930198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 30516375 - 30516431
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtcc 108  Q
    |||| ||||||||| |||||||||||||||||| || ||||| | ||||||||||||    
T  30516375 ttacattgaattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtcc 30516431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 35238207 - 35238251
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtc 101  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||    
T  35238207 ttgaattatgtcattttctcaaaatattatcggtgtcaatgtgtc 35238251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 36013816 - 36013872
Alignment:
Q  52 ttactttgaattatgtcatttt-ctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||| ||||||||||||||||| |||||||||||||   ||||||||||||||||||    
T  36013816 ttacattgaattatgtcatttttctcaaattattatcattgtcaatgtgtcagtgtc 36013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 11722122 - 11722193
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||||| ||||||||||||| |||   |||||   ||||||||||||||||||| |||||| ||||||    
T  11722122 tgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtg 11722193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 26733339 - 26733272
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtc 125  Q
    |||||||||| ||||| |||||||||||   ||||| | ||||||||||||||||||| || ||||||    
T  26733339 tgaattatgtgattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtctggtgtc 26733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 38134424 - 38134467
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaa 95  Q
    |||| ||||||||||||||||||||||||||||||  |||||||    
T  38134424 ttacattgaattatgtcattttctcaaattattatcggtgtcaa 38134467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 598241 - 598171
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||| || ||||||| |||||||||   ||||| ||||||||||||||||||| | || |||||||||||    
T  598241 aattacgtgattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgtgt 598171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 9778505 - 9778471
Alignment:
Q  96 tgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||||||||||||| ||||||||||||||    
T  9778505 tgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 9778471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 24339677 - 24339607
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||| ||||| |||||| ||||||||||||    
T  24339677 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgt 24339607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 36297369 - 36297442
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgtgt 132  Q
    |||||||||| ||||||| |||||||||   ||||| | |||||| |||||||||||| |||||||||| |||||    
T  36297369 tgaattatgtgattttcttaaattattagccgtgtcga-gtgtcaatgtccgtgtcgtgtccggtgtccttgtgt 36297442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 44172908 - 44172942
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  44172908 ttacattgaattatgtcattttctcaaattattat 44172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 927866 - 927907
Alignment:
Q  63 tatgtcattttctcaaattattatttgtgtcaatgtgtcagt 104  Q
    ||||||||||||||||||||||||| ||||| | ||||||||    
T  927866 tatgtcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 3801223 - 3801264
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtc 93  Q
    |||| ||||||||||| ||||||| |||||||||||||||||    
T  3801223 ttaccttgaattatgttattttcttaaattattatttgtgtc 3801264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 4909186 - 4909149
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaa 95  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  4909186 tgaattatgtaattttctcaaattattattggtgtcaa 4909149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 17851466 - 17851394
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||||| |||||||||   || || ||||||| || ||| |||||| ||||||||||||||    
T  17851466 tgaattatgtgattttctaaaattattagcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgtgt 17851394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 21141006 - 21141078
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| | ||||||| ||||||||| | ||||| | ||||| | ||||||||||| | ||||||||||||    
T  21141006 tgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgt 21141078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 34201064 - 34201113
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtc 101  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  34201064 ttacattgaattatgtcattttctcaaattattattagtgtcaatgtgtc 34201113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 22652012 - 22651939
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||| ||||| |||||||||||  ||||||   ||||||||||||||||||| ||||||||| ||||    
T  22652012 ttgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgt 22651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 28642443 - 28642373
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| | ||| |||||||||||   |||||||||||||| |||||||||||| |||| |||||||    
T  28642443 tgaattatgtaaatttttcaaattattaaccgtgtcaatgtgtcattgtccgtgtcgtgtccgatgtccgt 28642373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 18170500 - 18170577
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||| ||||||||||| ||||| ||||||| ||| |||||||   |||||||||||||||||||  ||||| ||||||    
T  18170500 ttacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtcgtgaccggtatccgtg 18170577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 18634068 - 18634145
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||| ||||||||||| ||||| ||||||| ||| |||||||   |||||||||||||||||||  ||||| ||||||    
T  18634068 ttacattgaattatgtaattttttcaaatttttaattgtgtcggcgtgtcagtgtccgtgtcgtgaccggtatccgtg 18634145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 44067548 - 44067479
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||||||||||||||||||  |||||   ||||||||||| |||| || || |||||||||||    
T  44067548 attatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcggtgtggtgtctggtgtccgtgt 44067479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 14692494 - 14692443
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 110  Q
    ||||||||||||||| ||||||||||||| |||||||  ||||||||||||||    
T  14692494 tgaattatgtcattt-ctcaaattattatctgtgtcagagtgtcagtgtccgt 14692443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 29510328 - 29510396
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtcc 126  Q
    |||||| ||| ||||| |||||||||||  ||||||   ||||||||||||||||||| ||||||||||    
T  29510328 tgaattttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 11815854 - 11815815
Alignment:
Q  68 cattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  11815854 cattttctcaaattattattggtgtcaacgtgtcagtgtc 11815815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 40063986 - 40063951
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtc 93  Q
    |||||||||||||||||||||||||||||| |||||    
T  40063986 tgaattatgtcattttctcaaattattattggtgtc 40063951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 2572082 - 2572152
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||| |||||||||||  |||||| | ||||| || |||||||||| ||| ||||||||||    
T  2572082 aattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgtgt 2572152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 24362226 - 24362296
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||| |||||||||||||   |||||   ||||| ||||| ||||||||||||||||||||    
T  24362226 tgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgt 24362296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 25192371 - 25192441
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||||| ||| |||||||||||  ||||||   |||||||||||||| |||| |||| |||||||    
T  25192371 tgaattatgtcactttttcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgt 25192441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 39820462 - 39820392
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||||||||||||||||||||  | ||||  ||||| ||||| ||||||| ||||||||| ||||    
T  39820462 aattatatcattttctcaaattattatacgggtcagcgtgtcggtgtctgtgtcgtgtccggtgtctgtgt 39820392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 926851 - 926884
Alignment:
Q  97 gtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||||||||||| ||||||||||||||    
T  926851 gtgtcagtgtccgtgtcgtgtccggtgtccgtgt 926884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 13845267 - 13845234
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtc 93  Q
    |||||| |||||||||||||||||||||||||||    
T  13845267 aattatatcattttctcaaattattatttgtgtc 13845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 14227263 - 14227210
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtg 105  Q
    |||| ||||||||||| ||||||||||||||||||| ||||  | |||||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgttgacgtgtcagtg 14227210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 14943129 - 14943170
Alignment:
Q  66 gtcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  14943129 gtcattttctcaaaattttattggtgtcaatgtgtcagtgtc 14943170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 24413583 - 24413656
Alignment:
Q  58 tgaattatgtcattttctcaaa-ttattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||  |||||||||| ||||||   |||||| | |||||||||||||||||| || |||||||||||    
T  24413583 tgaattatgtatttttctcaaaattattaacggtgtcagtatgtcagtgtccgtgtcgtgtctggtgtccgtgt 24413656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 28883902 - 28883931
Alignment:
Q  58 tgaattatgtcattttctcaaattattatt 87  Q
    ||||||||||||||||||||||||||||||    
T  28883902 tgaattatgtcattttctcaaattattatt 28883931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 29198497 - 29198530
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattatta 85  Q
    |||| |||||||||||||||||||||||||||||    
T  29198497 ttacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 29447128 - 29447169
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtc 93  Q
    |||| ||||||||||| ||||||||||||||||| |||||||    
T  29447128 ttacattgaattatgtgattttctcaaattattagttgtgtc 29447169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 13436988 - 13437056
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtcc 126  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||||||||| |||| | ||||||||||    
T  13436988 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtcc 13437056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 20873102 - 20873042
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccg 120  Q
    |||||||| ||||| |||||||||||| | ||||   ||||||||||||||||||| ||||    
T  20873102 aattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccg 20873042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 30068052 - 30068080
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  30068052 tgaattatgtcattttctcaaattattat 30068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 37225761 - 37225801
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgt 92  Q
    |||| ||||||||||| ||||||||||||||||||| ||||    
T  37225761 ttacattgaattatgttattttctcaaattattattggtgt 37225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 34589724 - 34589785
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||||||| |||||||||||    
T  34589724 ttacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgtgtccgtgtc 34589785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 12895300 - 12895368
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||| ||||| |||||||||||||||||||   |||||| ||| |||||||||||||||||||||    
T  12895300 aattatgtgattttttcaaattattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgt 12895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 23293010 - 23293082
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||| |||||||||||| ||||||||||||||    
T  23293010 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgt 23293082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 24343542 - 24343470
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||||||||||||||||  |||||   ||||| | ||||||||||| ||||||||||||||    
T  24343542 tgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgtgt 24343470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 48845178 - 48845126
Alignment:
Q  56 tttgaattatgtcattttctcaaattattattt-gtgtcaatgtgtcagtgtc 107  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||||||||    
T  48845178 tttgaattatgtcattttctcaaattattatttcgtgtccaagtgtcagtgtc 48845126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 19230327 - 19230381
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||| ||||||||||| |||||||||||||||||| | |||| ||||||||||||    
T  19230327 ttacattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgt 19230381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 27706203 - 27706273
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||| | ||||||||| ||||||| | |||||||||||| |||||| || |||||||||||    
T  27706203 aattatgtgatttttttaaattattaattgtgtcgacgtgtcagtgtccctgtcgtgtctggtgtccgtgt 27706273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 36635359 - 36635287
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||||||||||||||| | ||||    ||||||||||||| ||||| ||||||||| ||||    
T  36635359 tgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtctgtgt 36635287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 7012101 - 7012046
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||||||||||||||||||||||||||||  |||||   ||||| |||||||||||    
T  7012101 tgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtc 7012046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 21945538 - 21945467
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||||||||||| |||||||||||  ||||||    |||||||||| ||||| | |||||||||||||    
T  21945538 tgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtctgtgtcatgtccggtgtccgtg 21945467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 37496745 - 37496690
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||| |||||||||||||||||||||||  |||||  ||||||| |||||||||||    
T  37496745 ttacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtc 37496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 40179660 - 40179715
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||||||||| ||||| ||||| ||||| | ||||||| |||||||||||||||||    
T  40179660 tgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgtc 40179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 43506209 - 43506162
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtg 99  Q
    ||||||| |||||||| ||||||| ||||||||||| |||||||||||    
T  43506209 ttactttaaattatgtaattttcttaaattattattggtgtcaatgtg 43506162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 5654609 - 5654643
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattat 5654643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 10546189 - 10546155
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  10546189 ttacattgaattatgtcattttctcaaattattat 10546155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 18513259 - 18513293
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  18513259 ttacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 35158011 - 35158081
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| |||||  |||||||||| ||| |||   |||||||||||||||| || ||||||||||||||    
T  35158011 aattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgt 35158081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 14465317 - 14465346
Alignment:
Q  57 ttgaattatgtcattttctcaaattattat 86  Q
    ||||||||||||||||||||||||||||||    
T  14465317 ttgaattatgtcattttctcaaattattat 14465346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 20521872 - 20521941
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtcc 126  Q
    ||||||||||| ||||| ||||||||||||  || ||   ||||||||||||||||||| || |||||||    
T  20521872 ttgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtcc 20521941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 22440624 - 22440681
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    |||||||||| |||||||||||||||||   ||||| |||| ||||||||| ||||||    
T  22440624 tgaattatgtgattttctcaaattattaacggtgtcgatgtatcagtgtccatgtcgt 22440681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 24613719 - 24613760
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtc 93  Q
    |||| ||||||||||| ||||||||||||||||| |||||||    
T  24613719 ttacattgaattatgtgattttctcaaattattagttgtgtc 24613760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 31243572 - 31243613
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtg 99  Q
    |||||||||||||||||||||||||||||  ||||| |||||    
T  31243572 tgaattatgtcattttctcaaattattataagtgtcgatgtg 31243613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 40224524 - 40224598
Alignment:
Q  31 aattatgtcattttctcaaat----ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtc 101  Q
    |||||||||||||||||| ||    |||| |||| |||| ||||||||||||||||||||  ||||| |||||||    
T  40224524 aattatgtcattttctcacatattattacattgacttatatcattttctcaaattattatgggtgtcgatgtgtc 40224598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 43188648 - 43188619
Alignment:
Q  57 ttgaattatgtcattttctcaaattattat 86  Q
    ||||||||||||||||||||||||||||||    
T  43188648 ttgaattatgtcattttctcaaattattat 43188619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 7367579 - 7367539
Alignment:
Q  67 tcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  7367579 tcattttctcaaattattattggtgtctatgtgttagtgtc 7367539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 20743302 - 20743330
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  20743302 tgaattatgtcattttctcaaattattat 20743330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 32910586 - 32910558
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  32910586 tgaattatgtcattttctcaaattattat 32910558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 48557651 - 48557611
Alignment:
Q  67 tcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    ||||||||||||||| ||| | |||||||||||||||||||    
T  48557651 tcattttctcaaatttttactagtgtcaatgtgtcagtgtc 48557611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 53968581 - 53968509
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||||||||||| ||||||||||| || ||   ||||  ||||  ||||||||||| ||||||||||    
T  53968581 tgaattatgtcattttcttaaattattattggtatcggcgtgttggtgtttgtgtcgtatcctgtgtccgtgt 53968509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 54621853 - 54621805
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgt 100  Q
    |||| |||| |||||||||||||||||| ||||||| ||||| ||||||    
T  54621853 ttaccttgagttatgtcattttctcaaactattattggtgtcgatgtgt 54621805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 33303688 - 33303624
Alignment:
Q  64 atgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||| |||| || |||||||||    
T  33303688 atgtcattttttcaaattattattagtgtcgatgtgtcagtgtccgtatcgtgtctggtgtccgt 33303624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 34595169 - 34595098
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||||| ||||| ||||||||||| |||||||   |||||| |||||||||||| |||||||||||||    
T  34595169 tgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 1334702 - 1334626
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||| |||||||||||| |||| ||||| | ||||  ||||||||||||| ||||| ||||||| ||||||||||||    
T  1334702 ttacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtctgtgtcagtgtcgtgtccggtgtccgt 1334626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 8776997 - 8777069
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||| ||||| ||||||||||| |||||||   ||||||||||||||||||| |||| |||||||||    
T  8776997 tgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgt 8777069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 16766732 - 16766660
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||||||||| |||||| ||||||||||||||    
T  16766732 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgt 16766660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 426540 - 426610
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||| |||||||||||  ||||||   ||||||||||||||||||| |||||| |||||||    
T  426540 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgt 426610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 6389776 - 6389706
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||||||||||||||||||||  |||||   |||| |||||||||||||| ||||||||| ||||    
T  6389776 aattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgt 6389706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 7625155 - 7625085
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||||||||||||||||||||  ||||| | ||||| ||||| ||||||| |||| |||||||||    
T  7625155 aattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgt 7625085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 9024194 - 9024248
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||| ||||||||||||||||||||||||||| ||||||||| | ||||| ||||    
T  9024194 ttacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 8365544 - 8365613
Alignment:
Q  59 gaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    ||||||||| || || ||||||||||| |||||||   ||||||||||||||||||| || |||||||||    
T  8365544 gaattatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgt 8365613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 853885 - 853953
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||| ||||| ||||||||||| |||||||   |||||||  |||||||||| ||||||||||||    
T  853885 aattatgtgattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgt 853953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 9107394 - 9107466
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||| ||||| |||||||||||  ||||||   |||| |||||||||||||| ||||||||||||||    
T  9107394 tgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgtgt 9107466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 10760870 - 10760918
Alignment:
Q  63 tatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtg 111  Q
    ||||||||||||||||||||||||  ||||| | |||||||||||||||    
T  10760870 tatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtccgtg 10760918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 15443731 - 15443675
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    ||||||||||| |||||||||||||||||||  |||| | |||||||||| ||||||    
T  15443731 ttgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgttcgtgtc 15443675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 9027212 - 9027141
Alignment:
Q  59 gaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||| ||| |||||||||||||   |||||   ||||||||||||||||||| ||||| ||||||||    
T  9027212 gaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgt 9027141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 19044499 - 19044432
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtc 125  Q
    |||||||||| || |||||||||||||| | |||||   |||||||||||| |||||||| |||||||    
T  19044499 tgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtccatgtcgtattcggtgtc 19044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 20518376 - 20518317
Alignment:
Q  62 ttatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccgg 121  Q
    |||||| ||||||||||||| ||| | |||| | |||||||||||| |||||||||||||    
T  20518376 ttatgtaattttctcaaattgttagtggtgttagtgtgtcagtgtctgtgtcgtatccgg 20518317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 33135868 - 33135813
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtca-atgtgtcagtgtccgtg 111  Q
    ||||||||| ||||||||||||||||||||| ||||||  |||||| |||||||||    
T  33135868 ttgaattatatcattttctcaaattattattagtgtcatttgtgtctgtgtccgtg 33135813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 2140499 - 2140533
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  2140499 ttacattgaattatgtcattttctcaaattattat 2140533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 7938149 - 7938079
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| | ||||| |||||||||||  ||||||   |||||||||||| |||||| ||||||||||||||    
T  7938149 aattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgt 7938079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 12696359 - 12696297
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccg 120  Q
    |||||||||| ||||| |||||||||||  ||||||   ||||||||||||||||||| ||||    
T  12696359 tgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccg 12696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 21385204 - 21385170
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtca 94  Q
    |||||||||||||||||||||||||||| ||||||    
T  21385204 aattatgtcattttctcaaattattattcgtgtca 21385170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 4859131 - 4859172
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtc 93  Q
    |||| ||| ||||||||||||||||||||||||||| |||||    
T  4859131 ttacattggattatgtcattttctcaaattattattggtgtc 4859172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 7250996 - 7251033
Alignment:
Q  67 tcattttctcaaattattatttgtgtcaatgtgtcagt 104  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  7250996 tcattttctcaaattattattggtgtcaacgtgtcagt 7251033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 7942296 - 7942235
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||| ||||||||||||||| ||||||| |  |||||||||||  ||||||||| |||||||    
T  7942296 ttacattgaattatgtcattgtctcaaagttgtatttgtgtcagcgtgtcagtgaccgtgtc 7942235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 13211307 - 13211376
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||||||||||||||||||||||   |||| | ||||| |||||| ||| || ||| |||||||||    
T  13211307 aattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtccttgtggtgtcccgtgtccgtg 13211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 13851771 - 13851714
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    ||||||| || |||||||||||||||||   ||||| | |||||||||||||||||||    
T  13851771 tgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgt 13851714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 25038097 - 25038154
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtat 117  Q
    |||||||| |||||||||||||||||   ||||||| |||||||| || |||||||||    
T  25038097 aattatgtaattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgtat 25038154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 25096455 - 25096386
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||| ||||||||||||||||| | |||||   ||||| ||||| |||| ||||||| |||||||||    
T  25096455 attatgtgattttctcaaattattagtggtgtcgtcgtgtcggtgtctgtgttgtatccgatgtccgtgt 25096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 34446600 - 34446551
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtc 107  Q
    |||||||||||||||||||||||||||||  ||||||  ||||| |||||    
T  34446600 tgaattatgtcattttctcaaattattatccgtgtcagagtgtctgtgtc 34446551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 2153913 - 2153994
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgtgtttgtgcttcat 143  Q
    |||||| ||||||||| |||||||| || |||||   ||||| ||||||||||| | |||| |||||  |||||||||||||||    
T  2153913 aattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtccgtgtcatgtccgatgtcc--gtgtttgtgcttcat 2153994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 5000650 - 5000722
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||| |||| |||||||| ||||||||   ||||| | |||||||| |||||||| | ||||||||||||||    
T  5000650 tgaatcatgtgattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgtgt 5000722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 7977854 - 7977926
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||||| ||| |||||| ||| ||||||||||    
T  7977854 tgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgtgt 7977926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 15489750 - 15489810
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgt 112  Q
    |||| ||||||| ||| ||||| ||||||||||| ||||||| | |||| |||||||||||    
T  15489750 ttacattgaattgtgtaattttttcaaattattagttgtgtcgacgtgttagtgtccgtgt 15489810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 19147431 - 19147479
Alignment:
Q  62 ttatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgt 110  Q
    |||||| |||||||||||||||||  ||||||  |||||||||||||||    
T  19147431 ttatgtgattttctcaaattattagctgtgtccgtgtgtcagtgtccgt 19147479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 29711297 - 29711269
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  29711297 tgaattatgtcattttctcaaattattat 29711269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 30866162 - 30866238
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||| ||||||||||| |||||||||||||||||   ||||   |||||| ||||| ||||| | ||||||||||||    
T  30866162 ttacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgt 30866238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 33076441 - 33076413
Alignment:
Q  60 aattatgtcattttctcaaattattattt 88  Q
    |||||||||||||||||||||||||||||    
T  33076441 aattatgtcattttctcaaattattattt 33076413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 1486733 - 1486805
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  |||||||  |||||||| ||||||||||||||||| |||||||    
T  1486733 tgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgtgt 1486805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 22794105 - 22794178
Alignment:
Q  61 attatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgtgttt 134  Q
    ||||||||||||| ||||||||||||  ||||  | |||||||||||  ||||||||||||| |||||||||||    
T  22794105 attatgtcattttttcaaattattatccgtgttgacgtgtcagtgtctatgtcgtatccggtatccgtgtgttt 22794178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 34298471 - 34298399
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||||||||||||||| | |||||  ||||||||| |||||||||| || ||||| |||||    
T  34298471 tgaattatgtgattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtctggtgtacgtgt 34298399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 7779587 - 7779641
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||    
T  7779587 aattatgtcatttt-taaaattattatttgtgttaatgtgtcagtgttcgtgtcgt 7779641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 16812578 - 16812523
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||||||||| ||||| ||||||||||||| |||||  ||||||||||||||||||    
T  16812578 tgaattatgtgattttgtcaaattattattggtgtcggtgtgtcagtgtccgtgtc 16812523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 20157374 - 20157441
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtc 125  Q
    |||||||||| ||||||||| |||||||   ||||| ||||||||||| ||||||||| |||||||||    
T  20157374 tgaattatgtgattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtccggtgtc 20157441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 398789 - 398858
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccg 127  Q
    |||||||||| ||||| |||||||||||   |||||   ||||||||||||||||||| |||||||||||    
T  398789 tgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 10572614 - 10572683
Alignment:
Q  59 gaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    ||||||||| ||||||||||||||||| | |||||   |||||||||| | |||||| ||||||||||||    
T  10572614 gaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgt 10572683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 48040503 - 48040556
Alignment:
Q  75 tcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||||| ||||||   ||||||||||||||||||| ||||||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 48040556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 7918235 - 7918303
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtcc 126  Q
    |||||||||| ||||||||||||||||| |  |||||  |||||| |||| ||||||| ||||||||||    
T  7918235 tgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtccggtgtcc 7918303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 1262920 - 1262849
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    ||||||||||| |||||||||||||||||  ||||||   ||||| |||| |||||||| |||||| |||||    
T  1262920 ttgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccggtatccgt 1262849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 2896145 - 2896216
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||||| |||||||||||||||||   |||||   |||||||||||||||| || |||| ||||||||    
T  2896145 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtg 2896216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 3921708 - 3921673
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatt 87  Q
    |||| |||||||||||||||||||||||||||||||    
T  3921708 ttacattgaattatgtcattttctcaaattattatt 3921673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 1829428 - 1829466
Alignment:
Q  55 ctttgaattatgtcattttctcaaattattatttgtgtc 93  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  1829428 ctttgaattatttcattttctcaaattgttatttgtgtc 1829466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 11571626 - 11571592
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  11571626 ttacattgaattatgtcattttctcaaattattat 11571592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 15323196 - 15323126
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||| |||||||||||  ||| || |  ||||||||||| |||||| ||||||||||||||    
T  15323196 aattatgtgattttttcaaattattaactgtatcgacatgtcagtgtccatgtcgtgtccggtgtccgtgt 15323126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 40747791 - 40747825
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  40747791 ttacattgaattatgtcattttctcaaattattat 40747825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 43328500 - 43328454
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  43328500 aattatttcattttctcaaattattataagtgtcaacgtgtcagtgt 43328454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 38078679 - 38078740
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||| ||||||||||| ||||| |||||||||||  |||||| | |||||||||| ||||||    
T  38078679 ttacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgtc 38078740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 40917775 - 40917714
Alignment:
Q  69 attttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||| |||||||||||  ||||||   |||||||| |||||||||| ||||||||||||||    
T  40917775 attttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgt 40917714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 5927366 - 5927434
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||| | ||||| |||||||||||   |||| |  ||||||||||||||||||| ||||||||||||    
T  5927366 aattatatgattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgt 5927434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 6612195 - 6612267
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||| ||   |||||| |||||||||||| |||||||| |||||    
T  6612195 tgaattatgtaattttttcaaattattaactgtatcggcgtgtcattgtccgtgtcgtgtccggtgttcgtgt 6612267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 8203852 - 8203809
Alignment:
Q  62 ttatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||    
T  8203852 ttatgtcattttctcaaattatga-ttgagtcaatgtgtcagtgt 8203809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 42325595 - 42325567
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  42325595 tgaattatgtcattttctcaaattattat 42325567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 42359473 - 42359545
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||| ||||| |||||||||||  |||||||  |||||||||||||||| || | |||||| |||||    
T  42359473 tgaattttgtgattttttcaaattattagatgtgtcagcgtgtcagtgtccgtgttgtgtacggtgttcgtgt 42359545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 23354678 - 23354748
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| |||||||||||||||||||| |||||||   |||| ||||||||||| | ||||||||||||||    
T  23354678 aattatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgtgtcatgtccggtgtccgtgt 23354748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 12940959 - 12941016
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    |||||||| | ||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  12940959 tgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtccgtgtcgt 12941016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 15972908 - 15972836
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| ||| ||||| ||||||||||| |||||||   |||||||||||||||||||||| |||||| ||||    
T  15972908 tgaattgtgtaattttttcaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatctggtgtctgtgt 15972836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 36756368 - 36756440
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||  ||||||||||| ||||||| | ||||||||||| |||||||||||| ||| |||||    
T  36756368 tgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgtcgtatccgatgttcgtgt 36756440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 18841039 - 18841099
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccg 120  Q
    |||||||| ||||| ||||||||||| ||||||||  |||||||||||| |||||| ||||    
T  18841039 aattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccg 18841099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 20539700 - 20539768
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||| | ||||| |||||||||||  |||||| | ||||||||||||||||||| ||| ||||||||    
T  20539700 aattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgt 20539768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 23355021 - 23355089
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||| |||||||||||||||||||| |||||||   |||| ||||||||||| | ||| ||||||||    
T  23355021 aattatatcattttctcaaattattatctgtgtcagcatgtcggtgtccgtgtcatgtcccgtgtccgt 23355089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 10254068 - 10254005
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgt 115  Q
    |||| |||||||||||||||||||  |||||||||| ||||  |||||  ||||||||||||||    
T  10254068 ttacattgaattatgtcattttctacaattattattagtgttgatgtggtagtgtccgtgtcgt 10254005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 18421998 - 18421931
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtc 125  Q
    |||||||||| || || | ||||||||| |||||||   |||||||||||||||||||||||| ||||    
T  18421998 tgaattatgtgatatttttaaattattaattgtgtcggcgtgtcagtgtccgtgtcgtatccgatgtc 18421931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 19536421 - 19536492
Alignment:
Q  58 tgaattatgtcattttct-caaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||| | |||||||||| |||||||   |||||| |||||||||||| ||||||||||||    
T  19536421 tgaattatgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 19536492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 39399948 - 39399881
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgt 124  Q
    ||||||||||||||||||| ||| | | ||  |||||||||||||||||||| |||||| || |||||    
T  39399948 ttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgtcagtgtccatgtcgtgtctggtgt 39399881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 18571013 - 18570979
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  18571013 ttacattgaattatgtcattttctcaaattattat 18570979  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 30563450 - 30563416
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  30563450 ttacattgaattatgtcattttctcaaattattat 30563416  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 34785008 - 34785078
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||| ||||||| |||  |||| |||||||  |||||||||||||||||||| || || ||||||||    
T  34785008 aattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgtcgtgtctggggtccgtgt 34785078  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 37497161 - 37497107
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgt 106  Q
    |||| ||||||| || |||||||||||||||||||  ||||| ||||||||||||    
T  37497161 ttacattgaattgtggcattttctcaaattattatcagtgtcgatgtgtcagtgt 37497107  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 40682023 - 40681989
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattat 86  Q
    |||| ||||||||||||||||||||||||||||||    
T  40682023 ttacattgaattatgtcattttctcaaattattat 40681989  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 43586023 - 43586097
Alignment:
Q  52 ttactttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtcc 126  Q
    |||| ||||||||||||||||||||||| | |||| |||||  | ||||||||||| ||  ||| ||||||||||    
T  43586023 ttacattgaattatgtcattttctcaaaattttatctgtgttgacgtgtcagtgtcagtaccgtgtccggtgtcc 43586097  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 11670789 - 11670720
Alignment:
Q  59 gaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    ||||||||| ||||| ||||||||||| | | ||| | |||||||||||  |||||||| ||||||||||    
T  11670789 gaattatgtgattttttcaaattattagtggcgtcgacgtgtcagtgtctatgtcgtattcggtgtccgt 11670720  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 10535783 - 10535811
Alignment:
Q  58 tgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||||||||||||    
T  10535783 tgaattatgtcattttctcaaattattat 10535811  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 15657899 - 15657827
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| |||||  |||||||||| ||| |||   |||| |||||||||||||| ||||||| ||||||    
T  15657899 tgaattatgtgatttttacaaattattagttgagtcggcgtgttagtgtccgtgtcgtgtccggtgaccgtgt 15657827  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 25317176 - 25317144
Alignment:
Q  54 actttgaattatgtcattttctcaaattattat 86  Q
    |||||||||||||||||||| ||||||||||||    
T  25317176 actttgaattatgtcattttttcaaattattat 25317144  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 28412385 - 28412313
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||   ||||  | |||| |||||||||||||| || |||||||||||    
T  28412385 tgaattatgtgattttatcaaattattaacggtgttgacgtgttagtgtccgtgtcgtgtctggtgtccgtgt 28412313  T

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Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 20207 - 20137
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||| |||||||||||| ||||||||||||    
T  20207 tgaattatgtgattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 20137  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 8822 - 8761
Alignment:
Q  69 attttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||| |||||||||||  ||||||   ||||||||||||||||||| ||||||||||||||    
T  8822 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgt 8761  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 241627 - 241558
Alignment:
Q  60 aattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtg 129  Q
    |||||||| |||||  ||||||||||  ||||||   ||||||||||||||||||| |||||||||||||    
T  241627 aattatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 241558  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 21074 - 21006
Alignment:
Q  62 ttatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||| |||||||||||||||||   ||||||   |||||||||||||||||| || |||||||||||    
T  21074 ttatgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgt 21006  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 46717 - 46645
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| |||||||||||  ||||||   |||||| |||||||||||| |||| |||||||||    
T  46717 tgaattatgtgattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccgatgtccgtgt 46645  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 178854 - 178910
Alignment:
Q  69 attttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtc 125  Q
    ||||| ||||||||||| |||||||   ||||||||||||||||||| |||||||||    
T  178854 attttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 178910  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 263396 - 263468
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    ||||||||||  ||||||||||||||||   ||||  |  |||||||||||||||||||||| ||||||||||    
T  263396 tgaattatgtggttttctcaaattattagcagtgttgacatgtcagtgtccgtgtcgtatccagtgtccgtgt 263468  T

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Target: scaffold0598 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 8077 - 8132
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    |||||||||||||||||||||||||||||  || || | ||||| |||||||||||    
T  8077 tgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtccgtgtc 8132  T

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Target: scaffold0571 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 7726 - 7697
Alignment:
Q  57 ttgaattatgtcattttctcaaattattat 86  Q
    ||||||||||||||||||||||||||||||    
T  7726 ttgaattatgtcattttctcaaattattat 7697  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 135337 - 135406
Alignment:
Q  59 gaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgt 128  Q
    ||||||||| |||||||||||||||||   |||||  |||||  ||||| ||||||||| ||||||||||    
T  135337 gaattatgtgattttctcaaattattagcagtgtcggtgtgttggtgtctgtgtcgtattcggtgtccgt 135406  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 8701 - 8629
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||| ||||| ||||||  |||||||||   ||||| | |||||||||||| |||||| ||||||||||||||    
T  8701 tgaactatgtgattttcctaaattattagaagtgtcgacgtgtcagtgtccatgtcgtgtccggtgtccgtgt 8629  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 26429 - 26373
Alignment:
Q  57 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtc 113  Q
    ||||||||||| ||||||||||||||||| | ||||| | |||||| |||| |||||    
T  26429 ttgaattatgtgattttctcaaattattagtggtgtcgacgtgtcactgtctgtgtc 26373  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 130517 - 130445
Alignment:
Q  58 tgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtccgtgtcgtatccggtgtccgtgt 130  Q
    |||||||||| ||||| ||||| |||||  ||||||    ||||| |||||||||||| ||||||||||||||    
T  130517 tgaattatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgt 130445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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