View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0471_low_8 (Length: 285)

Name: NF0471_low_8
Description: NF0471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0471_low_8
NF0471_low_8
[»] chr2 (2 HSPs)
chr2 (45-232)||(26029161-26029348)
chr2 (155-226)||(30200755-30200826)
[»] chr4 (2 HSPs)
chr4 (155-230)||(42572736-42572811)
chr4 (155-230)||(11188628-11188703)
[»] chr7 (2 HSPs)
chr7 (156-230)||(6638527-6638601)
chr7 (194-226)||(27143191-27143223)
[»] scaffold0002 (1 HSPs)
scaffold0002 (155-226)||(466591-466662)
[»] chr5 (1 HSPs)
chr5 (155-226)||(35896258-35896329)
[»] chr3 (2 HSPs)
chr3 (155-226)||(52056000-52056071)
chr3 (155-226)||(53575610-53575681)
[»] chr1 (2 HSPs)
chr1 (155-226)||(16991083-16991154)
chr1 (155-226)||(31353796-31353867)
[»] chr8 (1 HSPs)
chr8 (155-196)||(39854409-39854450)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 26029348 - 26029161
Alignment:
Q  45 gagcagagaccagaactaattgcaaagcaaggataggatttaagaatatgggtggagtttggacggtgcgtgattttgaggcagaacataaccatattat 144  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26029348 gagcagagatcagaactaattgcaaagcaaggataggatttaagaatatgggtggagtttggacggtgcgtgattttgaggcagaacataaccatattat 26029249  T
Q  145 gcacactccggaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgatgatgtc 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26029248 gcacactccggaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagcggatgatgtc 26029161  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 30200826 - 30200755
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  30200826 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 30200755  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 42572811 - 42572736
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgatgatg 230  Q
    |||||||||||||||||| |||||||||||||| ||||  ||||||||||| | ||||||||||||||||||||||    
T  42572811 gaaacaactcatatgttgccatctcaaagaaaaatttctcaaattcaatgttagcaaattgatctagctgatgatg 42572736  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 11188628 - 11188703
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgatgatg 230  Q
    |||||||||||||  |||||||||||||||||| |||||||| ||||| | || |||||||||||| | |||||||    
T  11188628 gaaacaactcatacattgtcatctcaaagaaaagtttcagaatttcaacgccatcaaattgatctaccagatgatg 11188703  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 6638527 - 6638601
Alignment:
Q  156 aaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgatgatg 230  Q
    ||||||||||||||||| |||||||||||||| | ||  ||||||||||| | ||||||||||||||||||||||    
T  6638527 aaacaactcatatgttgccatctcaaagaaaaatctctcaaattcaatgttagcaaattgatctagctgatgatg 6638601  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 27143191 - 27143223
Alignment:
Q  194 gaaattcaatgtcaacaaattgatctagctgat 226  Q
    ||||||||||||||||||||||| |||||||||    
T  27143191 gaaattcaatgtcaacaaattgaactagctgat 27143223  T

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Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 466662 - 466591
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  466662 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 466591  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 35896258 - 35896329
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  35896258 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 35896329  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 52056071 - 52056000
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  52056071 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 52056000  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 53575681 - 53575610
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  53575681 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 53575610  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 16991083 - 16991154
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  16991083 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 16991154  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 31353796 - 31353867
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaaattcaatgtcaacaaattgatctagctgat 226  Q
    |||||||||||||||||||| |||||| ||||  |||| |||||||| |||||||||||||| |||||||||    
T  31353796 gaaacaactcatatgttgtcgtctcaacgaaaggtttctgaaattcattgtcaacaaattgaactagctgat 31353867  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 39854450 - 39854409
Alignment:
Q  155 gaaacaactcatatgttgtcatctcaaagaaaactttcagaa 196  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||    
T  39854450 gaaacaattcatatgttgtcatctcaacgaaaagtttcagaa 39854409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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