View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0473_low_1 (Length: 468)
Name: NF0473_low_1
Description: NF0473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0473_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 29 - 258
Target Start/End: Complemental strand, 31896476 - 31896242
Alignment:
| Q |
29 |
aaaaaggagtttccagtgaagatacatgtgaccgaataggagcttttgctcagttatgttatatgatcttgtatgtataattagaatggaccctttcaca |
128 |
Q |
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| T |
31896476 |
aaaaaggagtttccagtgaagatacatgtgaccgaataggagcttttgctcagttatgttatatgatcttgtatgtataattagaatggaccctttcaca |
31896377 |
T |
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| Q |
129 |
attaccactttcaacgtgttcattaagttc-----tttttagatgcttgagtgtagtagtgtgtaaccaagacaaactatgtttacagttgtatctactt |
223 |
Q |
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| T |
31896376 |
attaccactttcaacatgttcattaagttctataatttttagatgcttgagtgtagtagtgtgtaaccaagacaaactatgtttacagttgtatctactt |
31896277 |
T |
|
| Q |
224 |
gacttgaataaatgcaaaagattgcaatctgggta |
258 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31896276 |
gacttgaataaatgcaaaagattgcaatctgggta |
31896242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 257 - 461
Target Start/End: Complemental strand, 31896204 - 31896000
Alignment:
| Q |
257 |
tacttgacctagctactactattgccttaaaaaacttttcaagatgtacttttaattctactcaccaatatgtctagttccacttttgaaagtgtcgaaa |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
31896204 |
tacttgacctagctactactattgccttaaaaaacttttcaagatgtacttttaattctactcaccaatatgtctagttacacttttggaagagtcgaaa |
31896105 |
T |
|
| Q |
357 |
ttcattttagagatataaatttaattttgacatgtctaaatgtttttcaataagacaatattttttcattaccaatcatgctttaacgaaacgcaagaat |
456 |
Q |
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| T |
31896104 |
ttcattttagagatataaatttaattttaacatgtctaaatgtttttcaataagataatgttttttcattaccaatcgtgctttaacgaaacgcaagaat |
31896005 |
T |
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| Q |
457 |
aatct |
461 |
Q |
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||||| |
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| T |
31896004 |
aatct |
31896000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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