View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0474_high_5 (Length: 275)
Name: NF0474_high_5
Description: NF0474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0474_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 45313762 - 45313571
Alignment:
| Q |
31 |
agaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagct |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45313762 |
agaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttagtt |
45313663 |
T |
|
| Q |
131 |
ttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45313662 |
ttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcct |
45313571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 27759439 - 27759250
Alignment:
| Q |
29 |
acagaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagttag |
128 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27759439 |
acagaacagaggtgagagagatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgcactgcacaaattatcaacaattagtg-- |
27759342 |
T |
|
| Q |
129 |
ctttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaaattctttccacaagcct |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27759341 |
--ttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctccgtgaagttctttccacaagcct |
27759250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1610 times since January 2019
Visitors: 3460