View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0474_low_1 (Length: 555)

Name: NF0474_low_1
Description: NF0474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0474_low_1
NF0474_low_1
[»] chr1 (6 HSPs)
chr1 (30-541)||(19218823-19219336)
chr1 (30-423)||(19225198-19225591)
chr1 (114-192)||(19221516-19221594)
chr1 (491-540)||(19221889-19221938)
chr1 (491-540)||(19225111-19225160)
chr1 (120-188)||(361895-361963)
[»] chr2 (7 HSPs)
chr2 (35-314)||(27589215-27589485)
chr2 (43-193)||(27595372-27595522)
chr2 (58-309)||(27735434-27735679)
chr2 (43-291)||(27716889-27717134)
chr2 (58-291)||(27724210-27724437)
chr2 (120-181)||(13281090-13281151)
chr2 (120-181)||(44937794-44937855)
[»] chr8 (8 HSPs)
chr8 (103-316)||(14681843-14682047)
chr8 (120-188)||(27230281-27230349)
chr8 (127-185)||(13024762-13024820)
chr8 (120-162)||(13472941-13472983)
chr8 (120-181)||(15338146-15338207)
chr8 (120-181)||(15427211-15427272)
chr8 (120-181)||(15518515-15518576)
chr8 (120-181)||(27183902-27183963)
[»] chr5 (6 HSPs)
chr5 (123-185)||(37408347-37408409)
chr5 (119-207)||(9764509-9764597)
chr5 (123-169)||(24655526-24655572)
chr5 (123-169)||(29416809-29416855)
chr5 (120-181)||(39724568-39724629)
chr5 (125-170)||(41996231-41996276)
[»] chr3 (1 HSPs)
chr3 (123-184)||(2703734-2703795)
[»] chr6 (3 HSPs)
chr6 (120-181)||(29300096-29300157)
chr6 (120-170)||(29124166-29124216)
chr6 (120-181)||(29012850-29012911)
[»] chr4 (1 HSPs)
chr4 (120-185)||(48741978-48742043)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 30 - 541
Target Start/End: Complemental strand, 19219336 - 19218823
Alignment:
Q  30 ttaggatgggtcgatagacacttggaggtgttaaatggg--catgttgctatgatctcaaattgtgtaaagaccacttcgttccacatatcaatatcaat 127  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19219336 ttaggatgggtcgatagacacttggaggtgttaaatgggggcatgttgctatgatctcaaattgtgtaaaaaccacttcgttccacatatcaatatcaat 19219237  T
Q  128 tttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaag 227  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19219236 tttgggtgaactcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaag 19219137  T
Q  228 aagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcagg 327  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||    
T  19219136 aagggtgatatacttttcagaaatgatgataaagaattaatttgccttgatttaactactggagcaattaagaaaaatggtgttaaaacaggttctaagg 19219037  T
Q  328 taataacttatacaaaaacattcttatgattggaggaataaataaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtgtttt 427  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19219036 taataacttatacaaaaacattcttatgattgaaggaataaataaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtgtttt 19218937  T
Q  428 ggttctgtttatgcaatatgggttgtcaattgcctatgttaaaattattatcaagtatgagagaaatcttaatttctatggcatatgctagtattgattt 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19218936 ggttctgtttatgcaatatgggttgtcaattgcctatgttaaaattattatcaagtataagagaaatcttaatttctatggcatatgctagtattgattt 19218837  T
Q  528 agtttttattgttt 541  Q
    ||||||||||||||    
T  19218836 agtttttattgttt 19218823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 19225591 - 19225198
Alignment:
Q  30 ttaggatgggtcgatagacacttggaggtgttaaatgggcatgttgctatgatctcaaattgtgtaaagaccacttcgttccacatatcaatatcaattt 129  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19225591 ttaggatgggtcaatagacacttggaggtgttaaatgggcatgtcgctatgatctcaaattgtgtaaagaccacttcgttccacatatcaatatcaattt 19225492  T
Q  130 tgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19225491 tgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaa 19225392  T
Q  230 gggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaaacaagttctcaggta 329  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  19225391 gggtgatatacttttcagaaatgatgataatgaattattttgccttgatttaactactggagcaattgagaaaactggtgttaaaacaggttctcaggta 19225292  T
Q  330 ataacttatacaaaaacattcttatgattggaggaataaataaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtg 423  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19225291 ataacttatacaaaaacattcttatgattgaaggaataaataaatatttgttttgtggcctaggttttggctctcaagatttatgaccatagtg 19225198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 19221516 - 19221594
Alignment:
Q  114 atatcaatatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgaca 192  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  19221516 atatcaatatcaattttgggtgagctcgatgtgaaggaatcatggactaagctctttgatgttggacccttatccgaca 19221594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 540
Target Start/End: Original strand, 19221889 - 19221938
Alignment:
Q  491 aaatcttaatttctatggcatatgctagtattgatttagtttttattgtt 540  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  19221889 aaatcttaatttctatggcatatgctagtaatgttttagtttttattgtt 19221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 540
Target Start/End: Complemental strand, 19225160 - 19225111
Alignment:
Q  491 aaatcttaatttctatggcatatgctagtattgatttagtttttattgtt 540  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  19225160 aaatcttaatttctatggcatatgctagtattgttttagttttcattgtt 19225111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 361895 - 361963
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatct 188  Q
    ||||||||| | |||||  ||||||| |||||||||||||  |||||||||  ||||||||| ||||||    
T  361895 atatcaattcttggtgaaatcggtgtgaaggaatcatggataaagctcttcattgttggaccattatct 361963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 35 - 314
Target Start/End: Complemental strand, 27589485 - 27589215
Alignment:
Q  35 atgggtcgatagacacttggaggtgttaaatgggcatgttgctatgatctcaaattgtgtaaagaccacttcgttccacatatcaatatcaattttgggt 134  Q
    |||||| |||||| |||||| ||||||||||||||||||   |||||||||   || ||||||||||||||| |||||||||||||||||||| ||||||    
T  27589485 atgggttgatagagacttggcggtgttaaatgggcatgtaattatgatctcccgttatgtaaagaccacttctttccacatatcaatatcaatgttgggt 27589386  T
Q  135 gagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtg 234  Q
    |||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||        || | |||| |||||| || |||||||||    
T  27589385 gagcccggggtcaatgaatcatggattaagctcttcgatgttggacccttatctgacattaag--------cggt-ttattggagcaggggagaagggtg 27589295  T
Q  235 atatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtgttaaa 314  Q
    ||||| |||| | ||| |||||| ||||| |||| |  |||||||| ||||| |||| |||| |||| ||||||||||||    
T  27589294 atatattttttaaaaaagatgatgatgaactagcctatcttgatttgactaccggagtaattcagaacattggtgttaaa 27589215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 27595522 - 27595372
Alignment:
Q  43 atagacacttggaggtgttaaatgggcatgttgctatgatctcaaattgtgtaaagaccacttcgttccacatatcaatatcaattttgggtgagctcgg 142  Q
    ||||| |||||| ||||||||||||||||||   |||||||||   || ||| ||||||||||| |||||||||||||||||||| |||||||||| |||    
T  27595522 atagagacttggcggtgttaaatgggcatgtaattatgatctcccgttatgtgaagaccacttctttccacatatcaatatcaatgttgggtgagcccgg 27595423  T
Q  143 tgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacat 193  Q
     ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  27595422 ggtcaatgaatcatggattaagctcttcgatgttggacccttatctgacat 27595372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 309
Target Start/End: Complemental strand, 27735679 - 27735434
Alignment:
Q  58 tgttaaatgggcatgttgctatgatctcaaattgtgtaaagacca---cttcgttccacatatcaatatcaattttgggtgagctcggtgtcaaggaatc 154  Q
    ||||||||||   |||||||||||||  || || || ||||||||   |||| |||||||||||||||||| ||||||| || |  |||||||| |||||    
T  27735679 tgttaaatggttttgttgctatgatcgtaacttatgaaaagaccagtccttcattccacatatcaatatcagttttgggagaacctggtgtcaatgaatc 27735580  T
Q  155 atggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgat 254  Q
    ||||| |||||| ||||||||||||||  | |||| |||| | |||||         ||||||| || ||||||||||||||||| |||| ||||| |||    
T  27735579 atggattaagcttttcgatgttggacctatgtctggcatcgaccatcc---------tatcggaacagggaagaagggtgatatatttttgagaaaagat 27735489  T
Q  255 gataatgaattagcttgccttgatttaactactggagcaattaagaaaattggtg 309  Q
    |||  |||| | ||||| |||||||||||||| |||| |||  |||| |||||||    
T  27735488 gatggtgaacttgcttgtcttgatttaactaccggagtaatggagaacattggtg 27735434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 27717134 - 27716889
Alignment:
Q  43 atagacacttggaggtgttaaatgggcatgttgctatgatctcaaattgtgtaaagaccacttcgt---tccacatatcaatatcaattttgggtgagct 139  Q
    ||||| ||||||  || ||||||| ||||||||||||||||||||||| || |||||| ||||| |   |  ||| ||||||||| ||||||||||| |     
T  27717134 atagatacttggcagtcttaaatgagcatgttgctatgatctcaaattatgcaaagactacttcttctttgtacacatcaatatccattttgggtgaacc 27717035  T
Q  140 cggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatata 239  Q
     ||||||||||||||||||| ||||||||| ||| |||| ||||| |||  |||  |||||||         ||| |||| | ||||||||||  |||||    
T  27717034 tggtgtcaaggaatcatggattaagctctttgatattggtcccttgtcttgcatggagcatcc---------tattggagtagggaagaagggcaatata 27716944  T
Q  240 cttttcagaa---atgatgataatgaattagcttgccttgatttaactactggag 291  Q
     || ||||||   |||||||||||||| ||||||| |||||||||||||| ||||    
T  27716943 tttatcagaaaagatgatgataatgaactagcttgtcttgatttaactaccggag 27716889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 291
Target Start/End: Complemental strand, 27724437 - 27724210
Alignment:
Q  58 tgttaaatgggcatgttgctatgatctcaaattgtgtaaagacca---cttcgttccacatatcaatatcaattttgggtgagctcggtgtcaaggaatc 154  Q
    |||||||||||  ||||||||||||   || || || ||||||||   |||| |||||||||||||||||| ||||||| || | ||||||| |||||||    
T  27724437 tgttaaatgggtttgttgctatgattgtaacttatgcaaagaccagtccttctttccacatatcaatatcagttttgggagaacccggtgtcgaggaatc 27724338  T
Q  155 atggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgat 254  Q
    ||||| |||||| ||||||||||||| | | || | |||| | |||||         |||||||||| ||||||||||||||||| |||| ||||| |||    
T  27724337 atggattaagcttttcgatgttggactcatgtccggcatcgaccatcc---------tatcggagcagggaagaagggtgatatatttttgagaaaagat 27724247  T
Q  255 gataatgaattagcttgccttgatttaactactggag 291  Q
    |||  |||| | ||||| ||||||||||  |||||||    
T  27724246 gatggtgaacttgcttgtcttgatttaagcactggag 27724210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 13281090 - 13281151
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    |||||||||||||||||  | ||||| || |||||||||||||  |||||||||||||||||    
T  13281090 atatcaattttgggtgaaattggtgttaaagaatcatggactagactcttcgatgttggacc 13281151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 44937855 - 44937794
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    ||||||||||||||||| ||||| || || |||||||||||||| ||||| | |||||||||    
T  44937855 atatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggacc 44937794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 103 - 316
Target Start/End: Complemental strand, 14682047 - 14681843
Alignment:
Q  103 cttcgttccacatatcaatatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcc 202  Q
    |||| |||| ||||||||||||| ||||||| || | ||||||||| ||||||||||||||||| ||||||||||||||  | || | |||| | |||||    
T  14682047 cttctttccgcatatcaatatcagttttgggagaacccggtgtcaatgaatcatggactaagcttttcgatgttggacctatgtccggcatcgaccatcc 14681948  T
Q  203 tatcgatcttatcggagcatggaagaagggtgatatacttttcagaaatgatgataatgaattagcttgccttgatttaactactggagcaattaagaaa 302  Q
             ||| |||||| ||||||||| ||||||| |||| |||||  |||||  |||| | ||||| ||||||||||||||| ||| |||| ||||     
T  14681947 ---------tattggagcagggaagaaggttgatatagttttgagaaaatatgatggtgaacttgcttgtcttgatttaactacttgagtaattgagaac 14681857  T
Q  303 attggtgttaaaac 316  Q
    ||||||||||||||    
T  14681856 attggtgttaaaac 14681843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 27230349 - 27230281
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatct 188  Q
    |||||||||||||||||| | ||||||||||||||||||||||  ||||||||| ||||||| ||||||    
T  27230349 atatcaattttgggtgagattggtgtcaaggaatcatggactagactcttcgatattggacctttatct 27230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 13024820 - 13024762
Alignment:
Q  127 ttttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 185  Q
    |||||||||| ||||||||||| ||||| ||||||||  |||| | |||||||||||||    
T  13024820 ttttgggtgaactcggtgtcaaagaatcgtggactaaattctttgttgttggaccctta 13024762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 13472983 - 13472941
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggacta 162  Q
    |||||||||||||||||  |||||||||| |||||||||||||    
T  13472983 atatcaattttgggtgaaatcggtgtcaaagaatcatggacta 13472941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 15338207 - 15338146
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    ||||||||||||||||| ||||| || || |||||||||||||| || || | |||||||||    
T  15338207 atatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggacc 15338146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 15427272 - 15427211
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    ||||||||||||||||| ||||| || || |||||||||||||| || || | |||||||||    
T  15427272 atatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggacc 15427211  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 15518576 - 15518515
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    ||||||||||||||||| ||||| || || |||||||||||||| || || | |||||||||    
T  15518576 atatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggacc 15518515  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 27183902 - 27183963
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    ||||| |||||||||||  | |||||||| |||||||||| ||| ||||||||| |||||||    
T  27183902 atatcgattttgggtgaaattggtgtcaaagaatcatggattaaactcttcgatattggacc 27183963  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 37408409 - 37408347
Alignment:
Q  123 tcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 185  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  37408409 tcaattttgggtgagctcggtgtaaaggaatcatggacgaagctattcgttgttggaccctta 37408347  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 9764509 - 9764597
Alignment:
Q  119 aatatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacccttatctgacatcaagcatcctatcg 207  Q
    |||||||||||||||||| || ||||||||||||||||||| ||  |||||| ||||||  ||||| |||  |||  ||||||||||||    
T  9764509 aatatcaattttgggtgaacttggtgtcaaggaatcatggattagactcttctatgttgagcccttgtcttgcattgagcatcctatcg 9764597  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 24655526 - 24655572
Alignment:
Q  123 tcaattttgggtgagctcggtgtcaaggaatcatggactaagctctt 169  Q
    ||||||||||| || |||||||| |||||||||||||||||| ||||    
T  24655526 tcaattttgggagaactcggtgtaaaggaatcatggactaagatctt 24655572  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 29416855 - 29416809
Alignment:
Q  123 tcaattttgggtgagctcggtgtcaaggaatcatggactaagctctt 169  Q
    ||||||||||| || |||||||| |||||||||||||||||| ||||    
T  29416855 tcaattttgggagaactcggtgtaaaggaatcatggactaagatctt 29416809  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 39724629 - 39724568
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    |||||||||||||| || |||||| | || |||||||||||||| ||||||  |||||||||    
T  39724629 atatcaattttgggggaactcggtataaaagaatcatggactaaactcttcattgttggacc 39724568  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 41996276 - 41996231
Alignment:
Q  125 aattttgggtgagctcggtgtcaaggaatcatggactaagctcttc 170  Q
    |||||||||||| || | ||| ||||||||||||||||||||||||    
T  41996276 aattttgggtgaacttgatgtaaaggaatcatggactaagctcttc 41996231  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 2703734 - 2703795
Alignment:
Q  123 tcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctt 184  Q
    |||||||||||||| || ||||||||||||||||||| ||| ||||| ||||||| ||||||    
T  2703734 tcaattttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaaccctt 2703795  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 29300096 - 29300157
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    ||||||||||||||||||||| || | |||||||| ||||| || |||||| ||||||||||    
T  29300096 atatcaattttgggtgagctcagtataaaggaatcgtggaccaatctcttcaatgttggacc 29300157  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 29124166 - 29124216
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttc 170  Q
    ||||||||| |||||||| ||||| | |||||||||||||| |||||||||    
T  29124166 atatcaattctgggtgagatcggtatgaaggaatcatggaccaagctcttc 29124216  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 29012850 - 29012911
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggacc 181  Q
    |||||||||||||| ||  ||||||| |||||||||||||| || ||||||  |||||||||    
T  29012850 atatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggacc 29012911  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 48742043 - 48741978
Alignment:
Q  120 atatcaattttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 185  Q
    ||||||||||| ||||| |||||||| |||||||| |||||||| ||||||  | |||||||||||    
T  48742043 atatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggaccctta 48741978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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